Basic Information
Gene Model:Bol020559
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000122_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1294 bp
Transcript Length:651 bp
Protein Length:216 aa
Strand:+
Location:C03: 11962708 : 11964001
Gene CDSs(5): 1-304 | 466-536 | 850-927 | 1005-1099 | 1192-1294 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2300no description 3 156 1.2e-23Not foundNot found
Segsegseg 152 171 NANot foundNot found
superfamilySSF52172CheY-like 6 144 3.3e-26IPR011006CheY-like
HMMPantherPTHR23283SENSOR HISTIDINE KIN 11 148 2.2e-15Not foundNot found
HMMSmartSM00448no description 9 139 3.6e-19IPR001789Signal transduction response regulator, receiver region
ProfileScanPS50110RESPONSE_REGULATORY 10 143 26.255IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00072Response_reg 11 137 3.5e-20IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803658e-93ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WRG31e-91Q0WRG3_ARATH Putative two-component response regulator 3 protein OS=Arabidopsis thaliana GN=At2g41310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G413101e-92K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25307(2 genes,2 taxa):Brassica oleraceaBol020559
ORTHOMCL25307(2 genes,2 taxa):Brassica rapaBra000224
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:11545698..12240200 (+)A.thalianaChr2:16844864..17551175 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:11573797..12276898 (+)B.rapaA05:17764283..18311279 (+)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G413101722193317224427Chr2Subgenome_II219
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo