Basic Information
Gene Model:Bol020474
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000123
Sequence:
 | 
Gene Structure
Nucleotide Length:1497 bp
Transcript Length:1095 bp
Protein Length:364 aa
Strand:+
Location:C03: 11185392 : 11186888
Gene CDSs(3): 1-750 | 1076-1255 | 1333-1497 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 105 364 2.6e-69IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 105 361 1.3e-67IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 87 364 1.3e-104IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 87 364 1.3e-104Not foundNot found
HMMSmartSM00332no description 94 357 2e-80IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 100 359 0.00078IPR001932Protein phosphatase 2C-related
Segsegseg 95 101 NANot foundNot found
Segsegseg 348 360 NANot foundNot found
Segsegseg 11 37 NANot foundNot found
HMMPfamPF00481PP2C 103 352 1.4e-77IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 135 143 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9XEE81e-169P2C30_ARATH Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7NYD01e-103A7NYD0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024072001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384102e-77K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11518(7 genes,6 taxa):Arabidopsis thalianaAT2G40180.1
ORTHOMCL11518(7 genes,6 taxa):Brassica oleraceaBol020474
ORTHOMCL11518(7 genes,6 taxa):Brassica rapaBra000174
ORTHOMCL11518(7 genes,6 taxa):Vitis viniferaGSVIVT01032793001
ORTHOMCL11518(7 genes,6 taxa):Populus trichocarpaPOPTR_0008s07050.1
ORTHOMCL11518(7 genes,6 taxa):Populus trichocarpaPOPTR_0010s19430.1
ORTHOMCL11518(7 genes,6 taxa):Carica papayaevm.TU.supercontig_19.158
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:10791538..11299173 (+)A.thalianaChr3:20358896..20813036 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8562310..11380760 (+)B.rapaA05:19550322..22002536 (-)131
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G401801678252216784147Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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