Basic Information
Gene Model:Bol020438
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000123
Sequence:
 | 
Gene Structure
Nucleotide Length:669 bp
Transcript Length:669 bp
Protein Length:222 aa
Strand:-
Location:C03: 10927396 : 10928064
Gene CDSs(1): 1-669 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 48 65 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9ZR145e-32Y4317_ARATH Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9N1E35e-23B9N1E3_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_579432 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19969(3 genes,3 taxa):Brassica oleraceaBol020438
ORTHOMCL19969(3 genes,3 taxa):Brassica rapaBra000148
ORTHOMCL19969(3 genes,3 taxa):Populus trichocarpaPOPTR_0001s40760.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:10791538..11299173 (+)A.thalianaChr3:20358896..20813036 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:10502925..11177086 (+)B.rapaA09:11334128..12137436 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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