Basic Information
Gene Model:Bol020414
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000123
Sequence:
 | 
Gene Structure
Nucleotide Length:2616 bp
Transcript Length:1803 bp
Protein Length:600 aa
Strand:-
Location:C03: 10775631 : 10778246
Gene CDSs(2): 1-1241 | 2055-2616 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21576UNCHARACTERIZED NODU 10 565 2e-179Not foundNot found
HMMPantherPTHR21576:SF1UNCHARACTERIZED NODU 10 565 2e-179Not foundNot found
PatternScanPS00659GLYCOSYL_HYDROL_F5 75 84 NAIPR018087Glycoside hydrolase, family 5, conserved site
superfamilySSF103473MFS general substrat 11 565 2.4e-29IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF06813Nodulin-like 22 267 3.9e-161IPR010658Nodulin-like
Segsegseg 303 314 NANot foundNot found
Segsegseg 414 422 NANot foundNot found
Segsegseg 254 268 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004553 Molecular Function hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975 Biological Process carbohydrate metabolic process
Swiss-Prot
Best HitE_value Description
Q6CGU82e-06MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
O809600.0O80960_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g39210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL285(35 genes,8 taxa):Arabidopsis thalianaAT2G28120.1
ORTHOMCL285(35 genes,8 taxa):Arabidopsis thalianaAT2G39210.1
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol013414
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol016263
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol020414
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol025331
ORTHOMCL285(35 genes,8 taxa):Brassica oleraceaBol026387
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra000124
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra005059
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra011976
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra017085
ORTHOMCL285(35 genes,8 taxa):Brassica rapaBra034390
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01016196001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01016197001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01016200001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01031480001
ORTHOMCL285(35 genes,8 taxa):Vitis viniferaGSVIVT01033667001
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs03t0682100-00
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs03t0800000-01
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs03t0800000-02
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs10t0169900-00
ORTHOMCL285(35 genes,8 taxa):Oryza sativaOs12t0484600-02
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0002s13500.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0004s22540.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0006s12430.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0008s03280.1
ORTHOMCL285(35 genes,8 taxa):Populus trichocarpaPOPTR_0009s01190.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb01g004940.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb01g011890.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb02g005120.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb05g026300.1
ORTHOMCL285(35 genes,8 taxa):Sorghum bicolorSb08g014860.1
ORTHOMCL285(35 genes,8 taxa):Carica papayaevm.TU.supercontig_1.12
ORTHOMCL285(35 genes,8 taxa):Carica papayaevm.TU.supercontig_53.147
ORTHOMCL285(35 genes,8 taxa):Carica papayaevm.TU.supercontig_92.102
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:10502925..11177086 (+)B.rapaA09:11334128..12137436 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G392101636615716368275Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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