Basic Information
Gene Model:Bol020394
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000123
Sequence:
 | 
Gene Structure
Nucleotide Length:248 bp
Transcript Length:165 bp
Protein Length:54 aa
Strand:-
Location:C03: 10541243 : 10541490
Gene CDSs(2): 1-84 | 168-248 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01309UPF0057 10 25 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 4 54 1.2e-25IPR000612Uncharacterised protein family UPF0057
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 53 1.2e-24IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9ARD52e-18LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q941D74e-20Q941D7_ARATH Expressed protein OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6043(10 genes,7 taxa):Arabidopsis thalianaAT2G38905.1
ORTHOMCL6043(10 genes,7 taxa):Brassica oleraceaBol020394
ORTHOMCL6043(10 genes,7 taxa):Brassica oleraceaBol025321
ORTHOMCL6043(10 genes,7 taxa):Brassica rapaBra000104
ORTHOMCL6043(10 genes,7 taxa):Brassica rapaBra017095
ORTHOMCL6043(10 genes,7 taxa):Vitis viniferaGSVIVT01025602001
ORTHOMCL6043(10 genes,7 taxa):Oryza sativaOs03t0286900-01
ORTHOMCL6043(10 genes,7 taxa):Populus trichocarpaPOPTR_0008s04390.1
ORTHOMCL6043(10 genes,7 taxa):Sorghum bicolorSb01g038670.1
ORTHOMCL6043(10 genes,7 taxa):Sorghum bicolorSb09g002150.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:10502925..11177086 (+)B.rapaA09:11334128..12137436 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G389051624409916244503Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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