Basic Information
Gene Model:Bol020274
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000124
Sequence:
 | 
Gene Structure
Nucleotide Length:2660 bp
Transcript Length:1896 bp
Protein Length:631 aa
Strand:-
Location:Scaffold000124: 986037 : 988696
Gene CDSs(6): 1-69 | 146-1198 | 1264-1340 | 1413-1796 | 1873-2025 | 2501-2660 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 549 558 NANot foundNot found
Segsegseg 530 542 NANot foundNot found
Segsegseg 406 441 NANot foundNot found
Segsegseg 503 514 NANot foundNot found
Segsegseg 300 323 NANot foundNot found
Segsegseg 381 397 NANot foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 29 149 7.8e-17Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 29 149 7.8e-17Not foundNot found
HMMSmartSM00448no description 28 140 1.4e-29IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51294HTH_MYB 206 265 11.323IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 29 144 31.255IPR001789Signal transduction response regulator, receiver region
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 209 264 4.2e-30IPR006447Myb-like DNA-binding region, SHAQKYF class
HMMPfamPF00249Myb_DNA-binding 211 261 3.7e-13IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 30 141 9.1e-26IPR001789Signal transduction response regulator, receiver region
HMMPIRPIRSF036392Response regulator, 4 628 3.7e-261IPR017053Response regulator, plant B-type
Gene3DG3DSA:3.40.50.2300no description 28 180 2.7e-29Not foundNot found
Gene3DG3DSA:1.10.10.60no description 205 268 1.6e-23IPR012287Homeodomain-related
superfamilySSF52172CheY-like 25 148 7.7e-35IPR011006CheY-like
superfamilySSF46689Homeodomain-like 205 268 2.5e-20IPR009057Homeodomain-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ZWJ90.0ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q680A80.0Q680A8_ARATH ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G161100.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3097(13 genes,6 taxa):Arabidopsis thalianaAT3G16857.2
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol020274
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol022968
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol036899
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol037208
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra001643
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra012743
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra022183
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra033527
ORTHOMCL3097(13 genes,6 taxa):Vitis viniferaGSVIVT01035051001
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0008s22990.1
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0010s00320.1
ORTHOMCL3097(13 genes,6 taxa):Carica papayaevm.TU.supercontig_9.100
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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