Basic Information
Gene Model:Bol020264
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000124
Sequence:
 | 
Gene Structure
Nucleotide Length:4321 bp
Transcript Length:2199 bp
Protein Length:732 aa
Strand:+
Location:Scaffold000124: 866487 : 870807
Gene CDSs(21): 1-165 | 428-513 | 587-668 | 741-791 | 923-1096 | 1190-1344 | 1433-1541 | 1651-1750 | 1845-1900 | 2048-2113 | 2187-2269 | 2436-2569 | 2690-2900 | 2983-3111 | 3186-3246 | 3321-3380 | 3456-3514 | 3595-3682 | 3767-3889 | 4020-4085 | 4181-4321 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54585Cdc48 domain 2-like 87 193 3.1e-20Not foundNot found
superfamilySSF50692ADC-like 9 85 2.3e-12IPR009010Aspartate decarboxylase-like fold
superfamilySSF52540P-loop containing nu 485 730 5.6e-30Not foundNot found
superfamilySSF52540P-loop containing nu 201 483 1.2e-51Not foundNot found
HMMSmartSM00382no description 243 390 2.6e-17IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 522 643 1.5e-09IPR003593ATPase, AAA+ type, core
PatternScanPS00674AAA 358 376 NAIPR003960ATPase, AAA-type, conserved site
HMMPantherPTHR23078VESICULAR-FUSION PRO 1 732 0Not foundNot found
HMMPfamPF00004AAA 246 445 2e-81IPR003959ATPase, AAA-type, core
HMMPfamPF00004AAA 525 705 1.5e-07IPR003959ATPase, AAA-type, core
HMMPfamPF02933CDC48_2 111 149 2.5e-07IPR004201Cell division protein 48, CDC48, domain 2
HMMPfamPF02359CDC48_N 11 86 0.00054IPR003338ATPase, AAA-type, VAT, N-terminal
Gene3DG3DSA:3.40.50.300no description 485 655 1.3e-32Not foundNot found
Gene3DG3DSA:3.40.50.300no description 194 386 3.2e-42Not foundNot found
Gene3DG3DSA:1.10.8.60no description 389 475 2.3e-17Not foundNot found
Gene3DG3DSA:2.40.40.20no description 8 85 2.2e-09IPR009010Aspartate decarboxylase-like fold
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q9M0Y80.0NSF_ARATH Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
TrEMBL
Best HitE_value Description
B9H2U60.0B9H2U6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831118 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G049100.0K06027NSFvesicle-fusing ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1816(16 genes,8 taxa):Arabidopsis thalianaAT4G04910.1
ORTHOMCL1816(16 genes,8 taxa):Brassica oleraceaBol020264
ORTHOMCL1816(16 genes,8 taxa):Brassica oleraceaBol030577
ORTHOMCL1816(16 genes,8 taxa):Brassica oleraceaBol032663
ORTHOMCL1816(16 genes,8 taxa):Brassica rapaBra000808
ORTHOMCL1816(16 genes,8 taxa):Brassica rapaBra029529
ORTHOMCL1816(16 genes,8 taxa):Brassica rapaBra033538
ORTHOMCL1816(16 genes,8 taxa):Vitis viniferaGSVIVT01014341001
ORTHOMCL1816(16 genes,8 taxa):Oryza sativaOs05t0519400-01
ORTHOMCL1816(16 genes,8 taxa):Oryza sativaOs05t0519400-02
ORTHOMCL1816(16 genes,8 taxa):Oryza sativaOs05t0519400-03
ORTHOMCL1816(16 genes,8 taxa):Populus trichocarpaPOPTR_0004s04380.1
ORTHOMCL1816(16 genes,8 taxa):Populus trichocarpaPOPTR_0011s05260.1
ORTHOMCL1816(16 genes,8 taxa):Populus trichocarpaPOPTR_0011s05260.2
ORTHOMCL1816(16 genes,8 taxa):Sorghum bicolorSb01g014140.1
ORTHOMCL1816(16 genes,8 taxa):Carica papayaevm.TU.supercontig_21.39
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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