Basic Information
Gene Model:Bol020261
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000124
Sequence:
 | 
Gene Structure
Nucleotide Length:687 bp
Transcript Length:687 bp
Protein Length:228 aa
Strand:-
Location:Scaffold000124: 845783 : 846469
Gene CDSs(1): 1-687 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 203 214 NANot foundNot found
Segsegseg 19 47 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LSN71e-57BH147_ARATH Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9DGH01e-56B9DGH0_ARATH AT3G17100 protein OS=Arabidopsis thaliana GN=AT3G17100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25274(2 genes,2 taxa):Brassica oleraceaBol020261
ORTHOMCL25274(2 genes,2 taxa):Brassica rapaBra033542
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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