Basic Information
Gene Model:Bol020109
Gene Family:Protein Kinase Gene Families
Chromosome:C02
Scaffold:Scaffold000125
Sequence:
 | 
Gene Structure
Nucleotide Length:3785 bp
Transcript Length:2151 bp
Protein Length:716 aa
Strand:-
Location:C02: 32188832 : 32192616
Gene CDSs(10): 1-173 | 263-342 | 450-600 | 807-911 | 1022-1091 | 1189-1225 | 1370-1481 | 1556-1637 | 1731-1747 | 2462-3785 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258SERINE-THREONINE PRO 37 446 8e-174Not foundNot found
HMMPantherPTHR23258:SF442S-RECEPTOR KINASE 37 446 8e-174Not foundNot found
Gene3DG3DSA:3.40.50.1820no description 475 712 4.2e-57Not foundNot found
Gene3DG3DSA:1.10.510.10no description 180 396 1.9e-44Not foundNot found
Gene3DG3DSA:3.30.200.20no description 86 177 5.8e-16Not foundNot found
HMMPfamPF00069Pkinase 108 301 1.4e-46IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF02230Abhydrolase_2 484 712 3.1e-41IPR003140Phospholipase/carboxylesterase
PatternScanPS00108PROTEIN_KINASE_ST 224 236 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 109 131 NAIPR017441Protein kinase, ATP binding site
Segsegseg 399 421 NANot foundNot found
Segsegseg 306 324 NANot foundNot found
Segsegseg 131 142 NANot foundNot found
Segsegseg 110 121 NANot foundNot found
Segsegseg 8 28 NANot foundNot found
superfamilySSF53474alpha/beta-Hydrolase 484 713 8.1e-43Not foundNot found
superfamilySSF56112Protein kinase-like 75 393 4.1e-72IPR011009Protein kinase-like domain
HMMSmartSM00219no description 103 385 6.2e-15IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 103 385 3.9e-24IPR002290Serine/threonine-protein kinase domain
ProfileScanPS50011PROTEIN_KINASE_DOM 103 389 34.223IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016787 Molecular Function hydrolase activity
Swiss-Prot
Best HitE_value Description
C0LGH32e-54Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q94C250.0Q94C25_ARATH AT5g20050/F28I16_200 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_02206101e-115K06130LYPLA2lysophospholipase II
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6720(10 genes,8 taxa):Arabidopsis thalianaAT5G20050.1
ORTHOMCL6720(10 genes,8 taxa):Brassica oleraceaBol020109
ORTHOMCL6720(10 genes,8 taxa):Brassica oleraceaBol034582
ORTHOMCL6720(10 genes,8 taxa):Brassica rapaBra006536
ORTHOMCL6720(10 genes,8 taxa):Brassica rapaBra020082
ORTHOMCL6720(10 genes,8 taxa):Vitis viniferaGSVIVT01015489001
ORTHOMCL6720(10 genes,8 taxa):Oryza sativaOs06t0142650-00
ORTHOMCL6720(10 genes,8 taxa):Populus trichocarpaPOPTR_0018s06560.1
ORTHOMCL6720(10 genes,8 taxa):Sorghum bicolorSb10g002930.1
ORTHOMCL6720(10 genes,8 taxa):Carica papayaevm.TU.supercontig_75.64
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:32087366..32270638 (-)A.thalianaChr5:6720384..6815379 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:31820338..32255695 (+)B.rapaA03:31276062..31421553 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G2005067743026775845Chr5Subgenome_I16
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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