Basic Information
Gene Model:Bol020079
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000126
Sequence:
 | 
Gene Structure
Nucleotide Length:4234 bp
Transcript Length:1989 bp
Protein Length:662 aa
Strand:+
Location:C02: 36136636 : 36140869
Gene CDSs(21): 1-57 | 141-230 | 321-411 | 516-694 | 784-861 | 964-1086 | 1185-1280 | 1362-1487 | 1621-1717 | 1803-1879 | 1999-2097 | 2194-2277 | 2346-2537 | 2625-2750 | 3000-3032 | 3141-3237 | 3337-3387 | 3463-3541 | 3635-3716 | 3828-3886 | 4162-4234 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00995Sec1 43 646 2.5e-75IPR001619Sec1-like protein
Gene3DG3DSA:3.40.50.2060no description 16 147 3.8e-31Not foundNot found
Gene3DG3DSA:3.40.50.1910no description 150 291 6e-34Not foundNot found
superfamilySSF56815Sec1/munc18-like (SM 14 655 1.3e-148IPR001619Sec1-like protein
Segsegseg 649 662 NANot foundNot found
Segsegseg 347 363 NANot foundNot found
HMMPantherPTHR11679VESICLE PROTEIN SORT 32 652 0IPR001619Sec1-like protein
HMMPantherPTHR11679:SF5PLANT SEC1 32 652 0Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006904 Biological Process vesicle docking during exocytosis
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9SZ770.0SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2
TrEMBL
Best HitE_value Description
B9N3L80.0B9N3L8_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_837074 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
phu:Phum_PHUM4621904e-30K12479VPS45vacuolar protein sorting-associated protein 45
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT1G02010.1
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT1G12360.1
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT4G12120.1
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol010435
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol018489
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol020079
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol030527
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol031363
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra000761
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra019760
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra026974
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra029438
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra032660
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01016199001
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01026673001
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01027604001
ORTHOMCL573(25 genes,8 taxa):Oryza sativaOs04t0252400-01
ORTHOMCL573(25 genes,8 taxa):Oryza sativaOs06t0135900-01
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0001s08020.1
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0003s11540.1
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0014s06490.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb04g015010.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb06g003780.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb10g002411.1
ORTHOMCL573(25 genes,8 taxa):Carica papayaevm.TU.supercontig_29.81
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:35985630..36836732 (-)A.thalianaChr4:7067035..7322477 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:35985630..36823810 (+)B.rapaA09:32194386..32501234 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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