Basic Information
Gene Model:Bol020075
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000126
Sequence:
 | 
Gene Structure
Nucleotide Length:3732 bp
Transcript Length:1875 bp
Protein Length:624 aa
Strand:+
Location:C02: 36190282 : 36194013
Gene CDSs(14): 1-311 | 781-866 | 938-1122 | 1396-1658 | 1761-1899 | 1991-2063 | 2138-2251 | 2336-2500 | 2575-2665 | 2744-2828 | 2900-3043 | 3131-3187 | 3295-3386 | 3663-3732 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50962IAA_ARF 428 508 22.131IPR011525Aux/IAA-ARF-dimerisation
ProfileScanPS50863B3 92 194 10.687IPR003340Transcriptional factor B3
HMMPfamPF02362B3 91 196 2.8e-22IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 218 297 5.3e-33IPR010525Auxin response factor
Segsegseg 375 383 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 79 208 1.7e-30Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q9FX251e-137ARFM_ARATH Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3
TrEMBL
Best HitE_value Description
C0SUZ11e-131C0SUZ1_ARATH Putative uncharacterized protein At1g34310 (Fragment) OS=Arabidopsis thaliana GN=At1g34310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43296721e-97K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol006390
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol020075
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol024901
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol027367
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032178
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032614
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol035354
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra017362
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra018124
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra027944
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra034234
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:35985630..36836732 (-)A.thalianaChr4:7067035..7322477 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:35985630..36823810 (+)B.rapaA09:32194386..32501234 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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