Basic Information
Gene Model:Bol019896
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:2744 bp
Transcript Length:1653 bp
Protein Length:550 aa
Strand:-
Location:C09: 32919040 : 32921783
Gene CDSs(13): 1-183 | 275-389 | 475-563 | 641-714 | 783-929 | 1066-1219 | 1297-1390 | 1479-1591 | 1690-1789 | 1878-2010 | 2122-2213 | 2282-2405 | 2510-2744 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR00879SP: MFS transporter, 42 542 9.1e-97IPR003663Sugar/inositol transporter
Segsegseg 459 470 NANot foundNot found
Segsegseg 69 83 NANot foundNot found
Segsegseg 248 265 NANot foundNot found
Segsegseg 418 433 NANot foundNot found
Segsegseg 13 24 NANot foundNot found
HMMPantherPTHR11600:SF84SUGAR TRANSPORTER (H 52 412 1.7e-212Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 52 412 1.7e-212Not foundNot found
PatternScanPS00217SUGAR_TRANSPORT_2 210 235 NAIPR005829Sugar transporter, conserved site
ProfileScanPS50850MFS 104 535 50.851Not foundNot found
HMMPfamPF00083Sugar_tr 104 546 2.9e-102IPR005828General substrate transporter
superfamilySSF103473MFS general substrat 89 543 4.6e-66IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q56ZZ70.0PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9DGP10.0B9DGP1_ARATH AT5G16150 protein OS=Arabidopsis thaliana GN=AT5G16150 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_06g0210701e-64K08150SLC2A13, ITRMFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4130(12 genes,8 taxa):Arabidopsis thalianaAT5G16150.1
ORTHOMCL4130(12 genes,8 taxa):Brassica oleraceaBol019896
ORTHOMCL4130(12 genes,8 taxa):Brassica oleraceaBol034385
ORTHOMCL4130(12 genes,8 taxa):Brassica rapaBra006341
ORTHOMCL4130(12 genes,8 taxa):Brassica rapaBra008640
ORTHOMCL4130(12 genes,8 taxa):Vitis viniferaGSVIVT01031006001
ORTHOMCL4130(12 genes,8 taxa):Oryza sativaOs01t0133400-01
ORTHOMCL4130(12 genes,8 taxa):Populus trichocarpaPOPTR_0004s09700.1
ORTHOMCL4130(12 genes,8 taxa):Populus trichocarpaPOPTR_0005s15450.1
ORTHOMCL4130(12 genes,8 taxa):Populus trichocarpaPOPTR_0005s15450.2
ORTHOMCL4130(12 genes,8 taxa):Sorghum bicolorSb03g007080.1
ORTHOMCL4130(12 genes,8 taxa):Carica papayaevm.TU.supercontig_170.56
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32272854..33899531 (+)B.rapaA10:10299..911027 (+)162
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1615052725575275815Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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