Basic Information
Gene Model:Bol019876
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:1223 bp
Transcript Length:624 bp
Protein Length:207 aa
Strand:+
Location:C09: 32817406 : 32818628
Gene CDSs(5): 1-152 | 351-444 | 652-709 | 804-847 | 948-1223 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52799(Phosphotyrosine pro 18 167 2.2e-24Not foundNot found
Gene3DG3DSA:3.90.190.10no description 14 164 6.2e-53Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 110 120 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPfamPF03162Y_phosphatase2 15 173 4.1e-62IPR004861Protein-tyrosine phosphatase, SIW14-like
Segsegseg 81 92 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q9ZVN43e-52Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8LDU61e-105Q8LDU6_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15861(4 genes,4 taxa):Arabidopsis thalianaAT5G16480.1
ORTHOMCL15861(4 genes,4 taxa):Brassica oleraceaBol019876
ORTHOMCL15861(4 genes,4 taxa):Brassica rapaBra008620
ORTHOMCL15861(4 genes,4 taxa):Vitis viniferaGSVIVT01019113001
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32272854..33899531 (+)B.rapaA10:10299..911027 (+)162
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1648053811135382897Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo