Basic Information
Gene Model:Bol019843
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:1983 bp
Transcript Length:831 bp
Protein Length:276 aa
Strand:+
Location:C09: 32535782 : 32537764
Gene CDSs(7): 1-200 | 455-548 | 725-861 | 1085-1159 | 1474-1631 | 1721-1821 | 1918-1983 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05739SNARE 188 250 6.59999852526375E-20IPR000727Target SNARE coiled-coil region
superfamilySSF47661t-snare 20 238 3.299990775033379E-3IPR010989t-SNARE
ProfileScanPS50192T_SNARE 183 245 0.0IPR000727Target SNARE coiled-coil region
HMMPantherPTHR19957PTHR19957 28 213 2.8999780742320696E-Not foundNot found
HMMSmartSM00397t_SNARE 178 245 4.09999599045784E-18IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 19 120 3.3999997243771697E-IPR006011Syntaxin, N-terminal
HMMPantherPTHR19957:SF11PTHR19957:SF11 28 213 2.8999780742320696E-Not foundNot found
HMMSmartSM00503SynN 18 131 2.3999979815726498E-IPR006011Syntaxin, N-terminal
PatternScanPS00914SYNTAXIN 189 228 0.0IPR006012Syntaxin/epimorphin, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q392331e-129SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1
TrEMBL
Best HitE_value Description
A6M8U51e-156A6M8U5_BRAOL Syntaxin-like protein OS=Brassica oleracea PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G168301e-129K08488STX7syntaxin 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14349(5 genes,3 taxa):Arabidopsis thalianaAT5G16830.1
ORTHOMCL14349(5 genes,3 taxa):Brassica oleraceaBol019843
ORTHOMCL14349(5 genes,3 taxa):Brassica oleraceaBol034421
ORTHOMCL14349(5 genes,3 taxa):Brassica rapaBra006372
ORTHOMCL14349(5 genes,3 taxa):Brassica rapaBra008592
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32272854..33899531 (+)B.rapaA10:10299..911027 (+)162
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1683055328465535252Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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