Basic Information
Gene Model:Bol019836
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:4211 bp
Transcript Length:3438 bp
Protein Length:1145 aa
Strand:-
Location:C09: 32502286 : 32506496
Gene CDSs(3): 1-1743 | 2104-2911 | 3325-4211 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.40.10no description 110 203 2e-14Not foundNot found
Segsegseg 754 760 NANot foundNot found
Segsegseg 251 267 NANot foundNot found
HMMPfamPF03552Cellulose_synt 280 1145 0IPR005150Cellulose synthase
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
GO:0016760 Molecular Function cellulose synthase (UDP-forming) activity
GO:0030244 Biological Process cellulose biosynthetic process
Swiss-Prot
Best HitE_value Description
Q9LFL00.0CSLD2_ARATH Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9S2130.0B9S213_RICCO Cellulose synthase A catalytic subunit 3 [UDP-forming], putative OS=Ricinus communis GN=RCOM_1325350 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_11802700.0K00770E2.4.2.241,4-beta-D-xylan synthase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT1G02730.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT1G32180.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT2G21770.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT2G25540.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT2G33100.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT3G03050.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G18780.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G32410.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G38190.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G39350.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G05170.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G09870.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G16910.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G17420.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G44030.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G64740.1
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol000794
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol000831
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol000897
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol001786
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol003795
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol005866
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol008772
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol012859
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol013511
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol015406
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol015407
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol015898
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol017911
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol019072
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol019836
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol020799
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol021311
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol021340
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol024411
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol024469
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol028813
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol033774
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol034448
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol037956
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol040770
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra005524
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra005845
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra006036
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra006407
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra008583
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra011345
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra011865
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra011900
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra012578
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra021377
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra021827
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra023588
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra023952
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra024324
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra028768
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra029874
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra031904
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra032022
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033344
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033554
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033714
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033849
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra037793
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01013057001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01013471001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01021248001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01021798001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01022285001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01023643001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01023837001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01023850001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01024398001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01028071001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01028234001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01028402001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01032096001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01033297001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01034552001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01035830001
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs01t0750300-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs01t0750300-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs01t0750300-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0808100-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0808100-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0837100-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0837100-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-04
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-05
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-06
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0111800-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0111800-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0111800-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0336500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0601600-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0208500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0208500-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0252400-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-04
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-05
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0551600-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0551700-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0552800-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0552800-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0553000-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0553300-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0553400-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs08t0160500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs08t0345500-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs09t0422500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs10t0343400-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs10t0467800-01
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s01880.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s14460.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.3
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.4
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s45340.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0002s06710.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0002s20130.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0002s25970.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0003s09580.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0003s17630.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0004s05830.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0004s21860.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0005s02770.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0005s08970.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0005s21620.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s05110.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s19580.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s19580.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s26810.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0007s07120.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0007s07120.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0009s06560.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0009s17100.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0011s07040.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0013s02050.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0013s07900.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0014s12000.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0016s05520.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0016s05520.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0018s01540.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0018s11290.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0019s07620.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g002050.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g004210.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g019720.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g027880.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g006290.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g007810.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g010110.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g022011.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g025020.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g035980.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g035990.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036000.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036010.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036020.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036023.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036030.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb03g004320.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb03g034680.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb07g004110.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb07g011890.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb08g017750.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb09g005280.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb10g000980.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb10g019350.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb10g023430.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.contig_29394.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.contig_43728.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_1145.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_115.9
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_151.48
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_165.51
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_3.300
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_36.80
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_426.3
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_46.185
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_49.100
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_7.98
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_72.34
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32272854..33899531 (+)B.rapaA10:10299..911027 (+)162
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1691055616795565580Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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