Basic Information
Gene Model:Bol019803
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:3196 bp
Transcript Length:1731 bp
Protein Length:576 aa
Strand:+
Location:C09: 32181233 : 32184428
Gene CDSs(8): 1-226 | 679-1099 | 1337-1419 | 1655-1743 | 1894-1967 | 2138-2188 | 2300-2376 | 2487-3196 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 309 367 18.650IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 210 273 17.319IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 308 370 8.3e-15IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 209 276 4.3e-09IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 209 276 2.1e-17IPR016177DNA-binding, integrase-type
superfamilySSF54171DNA-binding domain 308 370 2.6e-20IPR016177DNA-binding, integrase-type
Segsegseg 441 450 NANot foundNot found
Segsegseg 532 538 NANot foundNot found
Segsegseg 165 181 NANot foundNot found
Segsegseg 344 349 NANot foundNot found
Segsegseg 400 416 NANot foundNot found
Segsegseg 115 136 NANot foundNot found
HMMPfamPF00847AP2 308 360 1.3e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 209 266 3.6e-11IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 309 373 2e-32IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 210 279 1.2e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8LSN20.0BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7L9U10.0A7L9U1_ARATH BABY BOOM OS=Arabidopsis thaliana GN=BBM PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G174300.0K09285OVM, ANTAP2-like factor, ANT lineage
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4135(12 genes,8 taxa):Arabidopsis thalianaAT5G17430.1
ORTHOMCL4135(12 genes,8 taxa):Brassica oleraceaBol019803
ORTHOMCL4135(12 genes,8 taxa):Brassica oleraceaBol021341
ORTHOMCL4135(12 genes,8 taxa):Brassica rapaBra013978
ORTHOMCL4135(12 genes,8 taxa):Brassica rapaBra023617
ORTHOMCL4135(12 genes,8 taxa):Vitis viniferaGSVIVT01019049001
ORTHOMCL4135(12 genes,8 taxa):Oryza sativaOs04t0504500-01
ORTHOMCL4135(12 genes,8 taxa):Populus trichocarpaPOPTR_0008s07610.1
ORTHOMCL4135(12 genes,8 taxa):Populus trichocarpaPOPTR_0010s18840.1
ORTHOMCL4135(12 genes,8 taxa):Sorghum bicolorSb03g042810.1
ORTHOMCL4135(12 genes,8 taxa):Sorghum bicolorSb04g025960.1
ORTHOMCL4135(12 genes,8 taxa):Carica papayaevm.TU.supercontig_99.42
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32039252..32217442 (+)B.rapaA08:14019597..14125821 (+)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1743057425425745568Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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