Basic Information
Gene Model:Bol019770
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:1728 bp
Transcript Length:1728 bp
Protein Length:575 aa
Strand:+
Location:C09: 31875819 : 31877546
Gene CDSs(1): 1-1728 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01699Na_Ca_ex 113 247 3.5e-33IPR004837Sodium/calcium exchanger membrane region
HMMPfamPF01699Na_Ca_ex 420 563 3.7e-33IPR004837Sodium/calcium exchanger membrane region
Segsegseg 380 392 NANot foundNot found
Segsegseg 3 32 NANot foundNot found
HMMPantherPTHR12266NA+/CA2+ K+ INDEPEND 233 574 1.1e-97Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9LJI21e-122CCX3_ARATH Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FKP10.0Q9FKP1_ARATH Similarity to unknown protein OS=Arabidopsis thaliana GN=At5g17860 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G178600.0K13754
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8449(9 genes,6 taxa):Arabidopsis thalianaAT5G17860.1
ORTHOMCL8449(9 genes,6 taxa):Brassica oleraceaBol019770
ORTHOMCL8449(9 genes,6 taxa):Brassica oleraceaBol021374
ORTHOMCL8449(9 genes,6 taxa):Brassica rapaBra002112
ORTHOMCL8449(9 genes,6 taxa):Brassica rapaBra023643
ORTHOMCL8449(9 genes,6 taxa):Vitis viniferaGSVIVT01029961001
ORTHOMCL8449(9 genes,6 taxa):Populus trichocarpaPOPTR_0013s06200.1
ORTHOMCL8449(9 genes,6 taxa):Populus trichocarpaPOPTR_0019s05670.1
ORTHOMCL8449(9 genes,6 taxa):Carica papayaevm.TU.supercontig_73.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6512Bol019770 Bol019771 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:27967024..32004612 (+)B.rapaA10:6145708..8231502 (-)258
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1786059023945904380Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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