Basic Information
Gene Model:Bol019729
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:2799 bp
Transcript Length:1419 bp
Protein Length:472 aa
Strand:+
Location:C09: 31596918 : 31599716
Gene CDSs(9): 1-321 | 713-841 | 926-982 | 1065-1157 | 1387-1592 | 1725-1816 | 1936-2153 | 2263-2452 | 2687-2799 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11782:SF8ADENOSINE DIPHOSPHAT 65 472 5.3e-284Not foundNot found
HMMPantherPTHR11782ADENOSINE/GUANOSINE 65 472 5.3e-284IPR000407Nucleoside phosphatase GDA1/CD39
HMMPfamPF01150GDA1_CD39 64 472 2.9e-130IPR000407Nucleoside phosphatase GDA1/CD39
Segsegseg 346 356 NANot foundNot found
Segsegseg 23 40 NANot foundNot found
PatternScanPS01238GDA1_CD39_NTPASE 190 205 NAIPR000407Nucleoside phosphatase GDA1/CD39
Gene Ontology
GO TermGO TypeDescription
GO:0016787 Molecular Function hydrolase activity
Swiss-Prot
Best HitE_value Description
P529141e-126NTPA_PEA Nucleoside-triphosphatase OS=Pisum sativum PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8L7040.0Q8L704_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G182800.0K14641APY1_2apyrase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1534(17 genes,8 taxa):Arabidopsis thalianaAT3G04080.1
ORTHOMCL1534(17 genes,8 taxa):Arabidopsis thalianaAT5G18280.2
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol001208
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol001954
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol019729
ORTHOMCL1534(17 genes,8 taxa):Brassica oleraceaBol034488
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra002150
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra006450
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra031947
ORTHOMCL1534(17 genes,8 taxa):Brassica rapaBra040151
ORTHOMCL1534(17 genes,8 taxa):Vitis viniferaGSVIVT01038278001
ORTHOMCL1534(17 genes,8 taxa):Oryza sativaOs07t0682800-01
ORTHOMCL1534(17 genes,8 taxa):Populus trichocarpaPOPTR_0013s05040.1
ORTHOMCL1534(17 genes,8 taxa):Populus trichocarpaPOPTR_0019s04650.1
ORTHOMCL1534(17 genes,8 taxa):Sorghum bicolorSb01g036510.1
ORTHOMCL1534(17 genes,8 taxa):Sorghum bicolorSb02g043200.1
ORTHOMCL1534(17 genes,8 taxa):Carica papayaevm.TU.supercontig_676.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:27967024..32004612 (+)B.rapaA10:6145708..8231502 (-)258
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1828060505146054875Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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