Basic Information
Gene Model:Bol019726
Gene Family:U-box Gene Family
Chromosome:C09
Scaffold:Scaffold000128
Sequence:
 | 
Gene Structure
Nucleotide Length:1593 bp
Transcript Length:1377 bp
Protein Length:458 aa
Strand:+
Location:C09: 31567100 : 31568692
Gene CDSs(2): 1-297 | 514-1593 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF04564U-box 75 148 5.5e-21IPR003613U box domain
Segsegseg 351 358 NANot foundNot found
Segsegseg 2 14 NANot foundNot found
Gene3DG3DSA:3.30.40.10no description 72 148 2.8e-21Not foundNot found
Gene3DG3DSA:1.25.10.10no description 153 446 3.6e-16IPR011989Armadillo-like helical
superfamilySSF57850RING/U-box 59 144 1.8e-10Not foundNot found
HMMSmartSM00504no description 79 141 2.5e-20IPR003613U box domain
superfamilySSF48371ARM repeat 115 448 1.5e-36IPR016024Armadillo-type fold
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 56 384 2e-10Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 56 384 2e-10Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q3E9F71e-164PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana GN=PUB46 PE=3 SV=1
TrEMBL
Best HitE_value Description
A7PZ611e-92A7PZ61_VITVI Chromosome chr4 scaffold_39, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026755001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL22985(2 genes,2 taxa):Arabidopsis thalianaAT5G18320.1
ORTHOMCL22985(2 genes,2 taxa):Brassica oleraceaBol019726
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:27967024..32004612 (+)B.rapaA10:6145708..8231502 (-)258
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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