Basic Information
Gene Model:Bol019672
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000129
Sequence:
 | 
Gene Structure
Nucleotide Length:1466 bp
Transcript Length:855 bp
Protein Length:284 aa
Strand:-
Location:C01: 5835263 : 5836728
Gene CDSs(5): 1-143 | 217-375 | 453-729 | 804-1046 | 1434-1466 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 12 284 8e-69IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 33 276 9.7e-62IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 12 284 2.3e-66IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 23 281 3.6e-88IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 12 284 8.7e-104IPR015655Protein phosphatase 2C
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q93YW51e-147P2C58_ARATH Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RVV71e-119B9RVV7_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1173310 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384103e-34K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13035(6 genes,5 taxa):Arabidopsis thalianaAT4G28400.1
ORTHOMCL13035(6 genes,5 taxa):Brassica oleraceaBol019672
ORTHOMCL13035(6 genes,5 taxa):Brassica rapaBra031134
ORTHOMCL13035(6 genes,5 taxa):Brassica rapaBra040157
ORTHOMCL13035(6 genes,5 taxa):Vitis viniferaGSVIVT01020581001
ORTHOMCL13035(6 genes,5 taxa):Populus trichocarpaPOPTR_0017s04500.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_5362Bol019671 Bol019672 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3592651..5859156 (+)B.rapaA08:4009191..4992264 (+)87
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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