Basic Information
Gene Model:Bol019543
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000130_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:3179 bp
Transcript Length:1383 bp
Protein Length:460 aa
Strand:-
Location:C06: 13067029 : 13070207
Gene CDSs(6): 1-1019 | 2465-2517 | 2596-2675 | 2801-2854 | 2927-3004 | 3081-3179 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 166 223 17.675IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 298 409 11.547IPR003340Transcriptional factor B3
superfamilySSF54171DNA-binding domain 165 226 8.1e-15IPR016177DNA-binding, integrase-type
Segsegseg 196 208 NANot foundNot found
HMMPfamPF02362B3 297 411 2.1e-28IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 165 214 1.2e-10IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:2.40.330.10no description 285 396 7.2e-28Not foundNot found
Gene3DG3DSA:3.30.730.10no description 165 226 5.1e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 166 231 9.1e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6881e-132RAVL3_ARATH AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GYV21e-78B9GYV2_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G511201e-132K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25182(2 genes,2 taxa):Brassica oleraceaBol019543
ORTHOMCL25182(2 genes,2 taxa):Brassica rapaBra018894
Tandem Duplication
ClusterGene Num.Gene List
Cluster_15412Bol019543 Bol019544 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:13031381..13659263 (-)A.thalianaChr1:18375538..18614162 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:13031381..13659263 (+)B.rapaA08:16542443..16751378 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo