Basic Information
Gene Model:Bol019542
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000130_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1975 bp
Transcript Length:1200 bp
Protein Length:399 aa
Strand:+
Location:C06: 13064753 : 13066727
Gene CDSs(7): 1-238 | 320-400 | 488-740 | 819-909 | 1270-1486 | 1574-1665 | 1748-1975 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 249 260 NANot foundNot found
Segsegseg 12 27 NANot foundNot found
HMMPfamPF08743Nse4 59 340 6.9e-10IPR014854Nse4
HMMPantherPTHR16140UNCHARACTERIZED 20 349 2.9e-78IPR014854Nse4
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6BDR85e-13NSE4_SCHPO Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe GN=nse4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9C6891e-170Q9C689_ARATH Putative uncharacterized protein F23H24.4 OS=Arabidopsis thaliana GN=At1g51130 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2888(13 genes,8 taxa):Arabidopsis thalianaAT1G51130.1
ORTHOMCL2888(13 genes,8 taxa):Brassica oleraceaBol005818
ORTHOMCL2888(13 genes,8 taxa):Brassica oleraceaBol019542
ORTHOMCL2888(13 genes,8 taxa):Brassica rapaBra018895
ORTHOMCL2888(13 genes,8 taxa):Brassica rapaBra030454
ORTHOMCL2888(13 genes,8 taxa):Vitis viniferaGSVIVT01033510001
ORTHOMCL2888(13 genes,8 taxa):Oryza sativaOs06t0618000-01
ORTHOMCL2888(13 genes,8 taxa):Populus trichocarpaPOPTR_0003s21830.1
ORTHOMCL2888(13 genes,8 taxa):Populus trichocarpaPOPTR_0016s04610.1
ORTHOMCL2888(13 genes,8 taxa):Populus trichocarpaPOPTR_0016s04710.1
ORTHOMCL2888(13 genes,8 taxa):Sorghum bicolorSb04g006460.1
ORTHOMCL2888(13 genes,8 taxa):Sorghum bicolorSb10g024320.1
ORTHOMCL2888(13 genes,8 taxa):Carica papayaevm.TU.supercontig_85.74
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:13031381..13659263 (-)A.thalianaChr1:18375538..18614162 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:13031381..13659263 (+)B.rapaA08:16542443..16751378 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G511301893927718941704Chr1Subgenome_III(LF)64
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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