Basic Information
Gene Model:Bol019497
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000130_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2560 bp
Transcript Length:1986 bp
Protein Length:661 aa
Strand:+
Location:C06: 12481962 : 12484521
Gene CDSs(8): 1-511 | 586-663 | 764-1212 | 1287-1376 | 1458-1563 | 1628-1877 | 1960-2296 | 2396-2560 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 324 638 36.767IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:3.30.200.20no description 305 395 1.8e-18Not foundNot found
Gene3DG3DSA:1.10.510.10no description 398 636 3.9e-44Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 18 637 7.4e-233Not foundNot found
superfamilySSF54106LysM domain 120 169 3.1e-06Not foundNot found
HMMPantherPTHR23258:SF421RECEPTOR PROTEIN KIN 18 637 7.4e-233Not foundNot found
superfamilySSF56112Protein kinase-like 294 633 1.1e-69IPR011009Protein kinase-like domain
Segsegseg 181 191 NANot foundNot found
Segsegseg 217 244 NANot foundNot found
Segsegseg 628 641 NANot foundNot found
Segsegseg 76 87 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 443 455 NAIPR008271Serine/threonine-protein kinase, active site
HMMPfamPF01476LysM 124 167 0.0002IPR018392Peptidoglycan-binding lysin domain
HMMPfamPF07714Pkinase_Tyr 330 520 1e-39IPR001245Tyrosine-protein kinase, catalytic domain
HMMSmartSM00219no description 324 633 1.7e-35IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 324 638 7.3e-30IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00257no description 123 167 5.6e-05IPR002482Peptidoglycan-binding Lysin subgroup
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016998 Biological Process cell wall macromolecule catabolic process
Swiss-Prot
Best HitE_value Description
Q9ZWC89e-48BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FZA70.0Q9FZA7_ARATH Putative uncharacterized protein T14L22.13 OS=Arabidopsis thaliana GN=T14L22.13 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_12791e-75K13429CERK1chitin elicitor receptor kinase 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5756(10 genes,8 taxa):Arabidopsis thalianaAT1G51940.1
ORTHOMCL5756(10 genes,8 taxa):Brassica oleraceaBol002016
ORTHOMCL5756(10 genes,8 taxa):Brassica oleraceaBol019497
ORTHOMCL5756(10 genes,8 taxa):Brassica rapaBra014302
ORTHOMCL5756(10 genes,8 taxa):Brassica rapaBra018937
ORTHOMCL5756(10 genes,8 taxa):Vitis viniferaGSVIVT01016975001
ORTHOMCL5756(10 genes,8 taxa):Oryza sativaOs01t0741200-01
ORTHOMCL5756(10 genes,8 taxa):Populus trichocarpaPOPTR_0001s19110.1
ORTHOMCL5756(10 genes,8 taxa):Sorghum bicolorSb03g034160.1
ORTHOMCL5756(10 genes,8 taxa):Carica papayaevm.TU.supercontig_25.20
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:12298571..13066727 (-)A.thalianaChr3:7256656..7530677 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:12210815..12767750 (+)B.rapaA08:17091944..17330925 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G519401929590419299118Chr1Subgenome_III(LF)64
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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