Basic Information
Gene Model:Bol019418
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000131
Sequence:
 | 
Gene Structure
Nucleotide Length:1450 bp
Transcript Length:573 bp
Protein Length:190 aa
Strand:+
Location:C06: 17753339 : 17754788
Gene CDSs(5): 1-151 | 239-315 | 443-520 | 625-695 | 1255-1450 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23283:SF49TWO-COMPONENT SENSOR 20 158 2.1e-14Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 20 158 2.1e-14Not foundNot found
HMMSmartSM00448no description 25 149 1.8e-18IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 22 154 1.9e-26IPR011006CheY-like
HMMPfamPF00072Response_reg 27 144 4.6e-22IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 25 153 1.9e-22Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 26 153 27.032IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZWS61e-87ARR6_ARATH Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q0WSS62e-86Q0WSS6_ARATH Response regulator 6 OS=Arabidopsis thaliana GN=At5g62920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G629202e-87K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19585(3 genes,3 taxa):Arabidopsis thalianaAT5G62920.1
ORTHOMCL19585(3 genes,3 taxa):Brassica oleraceaBol019418
ORTHOMCL19585(3 genes,3 taxa):Brassica rapaBra010132
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:16929995..18049954 (-)A.thalianaChr5:25136751..25456476 (+)59
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:16946862..17927816 (+)B.rapaA09:8326066..8577147 (+)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G629202525238625254212Chr5Subgenome_III(LF)59
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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