Basic Information
Gene Model:Bol019312
Gene Family:Kinesins gene family
Chromosome:C09
Scaffold:Scaffold000132
Sequence:
 | 
Gene Structure
Nucleotide Length:6214 bp
Transcript Length:3798 bp
Protein Length:1265 aa
Strand:+
Location:C09: 5587486 : 5593699
Gene CDSs(22): 1-134 | 225-438 | 526-755 | 826-1156 | 1235-1337 | 1424-1605 | 1676-1791 | 1933-2035 | 2152-2304 | 2412-2558 | 2666-2869 | 3127-3291 | 3377-3481 | 3603-3743 | 3828-4022 | 4151-4277 | 4358-4560 | 4647-4829 | 4901-4996 | 5067-5264 | 5629-5900 | 6019-6214 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 823 841 NANot foundNot found
Segsegseg 36 64 NANot foundNot found
Segsegseg 81 99 NANot foundNot found
Segsegseg 506 518 NANot foundNot found
Segsegseg 3 14 NANot foundNot found
Gene3DG3DSA:3.40.850.10no description 883 1251 9.2e-121IPR001752Kinesin, motor region
Gene3DG3DSA:1.20.80.10no description 375 491 1.5e-20IPR014352FERM/acyl-CoA-binding protein, 3-helical bundle
superfamilySSF50729PH domain-like 495 587 3.1e-07Not foundNot found
superfamilySSF56821Prismane protein-lik 831 892 9e-09IPR011254Prismane-like
superfamilySSF52540P-loop containing nu 888 1251 4.5e-119Not foundNot found
superfamilySSF47031Second domain of FER 375 492 1.9e-21IPR019748FERM central domain
Coilcoilcoiled-coil 781 854 NANot foundNot found
Coilcoilcoiled-coil 616 676 NANot foundNot found
Coilcoilcoiled-coil 752 773 NANot foundNot found
PatternScanPS00411KINESIN_MOTOR_DOMAIN 1109 1120 NAIPR019821Kinesin, motor region, conserved site
ProfileScanPS51016MYTH4 114 271 49.943IPR000857Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4
ProfileScanPS50057FERM_3 276 591 36.778IPR000299FERM domain
ProfileScanPS50067KINESIN_MOTOR_DOMAIN 885 1140 51.826IPR001752Kinesin, motor region
HMMPantherPTHR16012KINESIN HEAVY CHAIN 889 1263 8.9e-284Not foundNot found
HMMPantherPTHR16012:SF172CALMODULIN BINDING P 889 1263 8.9e-284Not foundNot found
HMMSmartSM00129no description 886 1217 4.8e-166IPR001752Kinesin, motor region
HMMSmartSM00295no description 272 497 4.2e-38IPR019749Band 4.1 domain
HMMSmartSM00139no description 114 271 9.8e-45IPR000857Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4
HMMPfamPF00225Kinesin 894 1210 4.7e-153IPR001752Kinesin, motor region
HMMPfamPF00373FERM_M 382 498 5.1e-18IPR019748FERM central domain
HMMPfamPF09379FERM_N 280 380 1e-16IPR018979FERM, N-terminal
HMMPfamPF00784MyTH4 156 271 1.8e-54IPR000857Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4
Gene Ontology
GO TermGO TypeDescription
GO:0003777 Molecular Function microtubule motor activity
GO:0003824 Molecular Function catalytic activity
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0005856 Cellular Component cytoskeleton
GO:0007018 Biological Process microtubule-based movement
Swiss-Prot
Best HitE_value Description
Q9BVG84e-77KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=3
TrEMBL
Best HitE_value Description
Q9FHN80.0Q9FHN8_ARATH Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=At5g65930 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tgo:TGME49_0854101e-117K10406KIFC2_3kinesin family member C2/C3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3374(13 genes,8 taxa):Arabidopsis thalianaAT5G65930.2
ORTHOMCL3374(13 genes,8 taxa):Brassica oleraceaBol000633
ORTHOMCL3374(13 genes,8 taxa):Brassica oleraceaBol019312
ORTHOMCL3374(13 genes,8 taxa):Brassica rapaBra031801
ORTHOMCL3374(13 genes,8 taxa):Brassica rapaBra037195
ORTHOMCL3374(13 genes,8 taxa):Vitis viniferaGSVIVT01026414001
ORTHOMCL3374(13 genes,8 taxa):Oryza sativaOs04t0666900-01
ORTHOMCL3374(13 genes,8 taxa):Oryza sativaOs04t0666900-02
ORTHOMCL3374(13 genes,8 taxa):Populus trichocarpaPOPTR_0001s45950.1
ORTHOMCL3374(13 genes,8 taxa):Populus trichocarpaPOPTR_0011s14970.1
ORTHOMCL3374(13 genes,8 taxa):Sorghum bicolorSb06g032060.1
ORTHOMCL3374(13 genes,8 taxa):Sorghum bicolorSb08g015477.1
ORTHOMCL3374(13 genes,8 taxa):Carica papayaevm.TU.supercontig_17.14
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5866942 (+)B.rapaA09:9495578..10031613 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G659302637020126376520Chr5Subgenome_I73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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