Basic Information
Gene Model:Bol019305
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C09
Scaffold:Scaffold000132
Sequence:
 | 
Gene Structure
Nucleotide Length:644 bp
Transcript Length:375 bp
Protein Length:124 aa
Strand:-
Location:C09: 5560478 : 5561121
Gene CDSs(4): 1-75 | 168-292 | 373-455 | 553-644 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.250.10no description 11 124 4e-28IPR001763Rhodanese-like
HMMPantherPTHR13253FAMILY NOT NAMED 7 123 1.3e-07Not foundNot found
HMMSmartSM00450no description 11 121 1.2e-19IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 21 124 18.469IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 7 124 1.4e-25IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 28 118 2.8e-16IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q391294e-49STR16_ARATH Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9SXL05e-39B9SXL0_RICCO Senescence-associated protein DIN1, putative OS=Ricinus communis GN=RCOM_0017290 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pgu:PGUG_044172e-08K11996MOCS3, UBA4, moeBadenylyltransferase and sulfurtransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6571(10 genes,8 taxa):Arabidopsis thalianaAT4G35770.1
ORTHOMCL6571(10 genes,8 taxa):Arabidopsis thalianaAT5G66040.1
ORTHOMCL6571(10 genes,8 taxa):Brassica oleraceaBol019305
ORTHOMCL6571(10 genes,8 taxa):Brassica rapaBra011636
ORTHOMCL6571(10 genes,8 taxa):Brassica rapaBra037191
ORTHOMCL6571(10 genes,8 taxa):Vitis viniferaGSVIVT01002334001
ORTHOMCL6571(10 genes,8 taxa):Oryza sativaOs06t0725000-01
ORTHOMCL6571(10 genes,8 taxa):Populus trichocarpaPOPTR_0005s10850.1
ORTHOMCL6571(10 genes,8 taxa):Sorghum bicolorSb10g030520.1
ORTHOMCL6571(10 genes,8 taxa):Carica papayaevm.TU.supercontig_6.320
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:5498986..5593699 (-)A.thalianaChr5:26370201..26471658 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5866942 (+)B.rapaA09:9495578..10031613 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G660402641052026411352Chr5Subgenome_I73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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