Basic Information
Gene Model:Bol019244
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000132
Sequence:
 | 
Gene Structure
Nucleotide Length:1153 bp
Transcript Length:999 bp
Protein Length:332 aa
Strand:-
Location:C09: 5070821 : 5071973
Gene CDSs(3): 1-300 | 375-493 | 574-1153 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 212 319 0.00069Not foundNot found
Gene3DG3DSA:2.40.330.10no description 7 139 3.6e-20Not foundNot found
HMMPfamPF02362B3 59 139 2.9e-19IPR003340Transcriptional factor B3
ProfileScanPS50863B3 58 137 13.592IPR003340Transcriptional factor B3
ProfileScanPS50863B3 218 317 10.898IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FGD21e-85Y5698_ARATH Putative B3 domain-containing protein At5g66980 OS=Arabidopsis thaliana GN=At5g66980 PE=3 SV=1
TrEMBL
Best HitE_value Description
A5B3C82e-24A5B3C8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011465 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL16175(4 genes,4 taxa):Brassica oleraceaBol019244
ORTHOMCL16175(4 genes,4 taxa):Brassica rapaBra037132
ORTHOMCL16175(4 genes,4 taxa):Vitis viniferaGSVIVT01031853001
ORTHOMCL16175(4 genes,4 taxa):Populus trichocarpaPOPTR_0007s11890.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5450513 (-)A.thalianaChr5:26530235..26889238 (+)50
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5866942 (+)B.rapaA09:9495578..10031613 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G669802674156326742826Chr5Subgenome_I73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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