Basic Information
Gene Model:Bol019242
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000132
Sequence:
 | 
Gene Structure
Nucleotide Length:1112 bp
Transcript Length:810 bp
Protein Length:269 aa
Strand:+
Location:C09: 5067542 : 5068653
Gene CDSs(4): 1-116 | 224-378 | 466-788 | 897-1112 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 258 269 NANot foundNot found
Segsegseg 26 37 NANot foundNot found
HMMPfamPF02042RWP-RK 143 190 4.3e-14IPR003035Plant regulator RWP-RK
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9FGD15e-76Q9FGD1_ARATH Gb|AAF27101.1 OS=Arabidopsis thaliana GN=At5g66990 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12677(6 genes,5 taxa):Arabidopsis thalianaAT1G74480.1
ORTHOMCL12677(6 genes,5 taxa):Brassica oleraceaBol019242
ORTHOMCL12677(6 genes,5 taxa):Brassica oleraceaBol026164
ORTHOMCL12677(6 genes,5 taxa):Brassica rapaBra015907
ORTHOMCL12677(6 genes,5 taxa):Vitis viniferaGSVIVT01007998001
ORTHOMCL12677(6 genes,5 taxa):Carica papayaevm.TU.supercontig_423.7
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5450513 (-)A.thalianaChr5:26530235..26889238 (+)50
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5866942 (+)B.rapaA09:9495578..10031613 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G669902674425726745362Chr5Subgenome_I73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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