Basic Information
Gene Model:Bol019224
Gene Family:U-box Gene Family
Chromosome:C09
Scaffold:Scaffold000132
Sequence:
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Gene Structure
Nucleotide Length:3017 bp
Transcript Length:2214 bp
Protein Length:737 aa
Strand:-
Location:C09: 4934468 : 4937484
Gene CDSs(4): 1-57 | 137-1900 | 2542-2658 | 2742-3017 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50176ARM_REPEAT 618 659 10.062IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 536 578 9.187IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 577 619 11.602IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 495 537 13.807IPR000225Armadillo
HMMPantherPTHR23315BETA CATENIN-RELATED 452 721 9.4e-23Not foundNot found
HMMPantherPTHR23315:SF7ANKYRIN-REPEAT-ARM D 452 721 9.4e-23Not foundNot found
HMMSmartSM00185no description 647 687 39IPR000225Armadillo
HMMSmartSM00185no description 525 565 0.044IPR000225Armadillo
HMMSmartSM00185no description 566 606 0.0018IPR000225Armadillo
HMMSmartSM00185no description 607 646 0.0019IPR000225Armadillo
HMMSmartSM00185no description 484 524 3.7e-06IPR000225Armadillo
HMMSmartSM00504no description 239 302 6.6e-30IPR003613U box domain
HMMPfamPF00514Arm 647 687 0.0038IPR000225Armadillo
HMMPfamPF00514Arm 566 606 3.9e-08IPR000225Armadillo
HMMPfamPF00514Arm 607 646 6.6e-06IPR000225Armadillo
HMMPfamPF00514Arm 484 524 6.5e-10IPR000225Armadillo
HMMPfamPF00514Arm 525 565 2.8e-07IPR000225Armadillo
HMMPfamPF04564U-box 236 309 6.5e-31IPR003613U box domain
Segsegseg 402 411 NANot foundNot found
Segsegseg 194 206 NANot foundNot found
superfamilySSF57850RING/U-box 219 304 7.6e-12Not foundNot found
superfamilySSF48371ARM repeat 276 729 3.8e-67IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.10no description 455 727 2.2e-58IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 232 309 4.6e-26Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q5XEZ80.0PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9NAE70.0B9NAE7_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_278332 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
lel:LELG_056929e-24K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12172(7 genes,5 taxa):Arabidopsis thalianaAT5G67340.1
ORTHOMCL12172(7 genes,5 taxa):Brassica oleraceaBol014311
ORTHOMCL12172(7 genes,5 taxa):Brassica oleraceaBol019224
ORTHOMCL12172(7 genes,5 taxa):Brassica rapaBra012155
ORTHOMCL12172(7 genes,5 taxa):Brassica rapaBra037117
ORTHOMCL12172(7 genes,5 taxa):Vitis viniferaGSVIVT01000169001
ORTHOMCL12172(7 genes,5 taxa):Populus trichocarpaPOPTR_0007s10280.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5450513 (-)A.thalianaChr5:26530235..26889238 (+)50
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4434047..5026702 (+)B.rapaA09:7722370..7951360 (+)35
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G673402686455626867602Chr5Subgenome_I73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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