Basic Information
Gene Model:Bol019220
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000132
Sequence:
 | 
Gene Structure
Nucleotide Length:2127 bp
Transcript Length:2127 bp
Protein Length:708 aa
Strand:+
Location:C09: 4889539 : 4891665
Gene CDSs(1): 1-2127 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 5 708 0IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 5 708 0Not foundNot found
HMMPfamPF02225PA 321 411 1.2e-24IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 73 552 1.6e-12IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 1 66 2.2e-15IPR010259Proteinase inhibitor I9, subtilisin propeptide
superfamilySSF52743Subtilisin-like 64 567 2.8e-78IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 492 502 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 91 563 2.3e-69IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653510.0SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
A7PLM30.0A7PLM3_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019628001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT1G01900.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT1G04110.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT2G04160.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT2G05920.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT4G34980.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G45640.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G45650.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G51750.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G59810.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G67360.1
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol000227
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol004005
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol005074
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol005925
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol008090
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol008908
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol014309
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol014865
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol015953
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019218
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019219
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019220
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019222
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol024254
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol029398
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol032081
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol032186
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol035569
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol040437
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol040868
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol042499
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra001542
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra012157
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra013212
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra014350
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra015172
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra015290
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra017598
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra017684
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra020285
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra021529
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra021614
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra027353
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra027376
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra028274
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra033113
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra033226
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra036803
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra037112
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra037113
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra037115
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra039051
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01000156001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01002783001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006968001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006970001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006972001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006973001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01014788001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01015069001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01016682001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01021314001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01021320001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01024042001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01027586001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01028051001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01030138001
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0198700-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0779200-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0779200-02
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0779900-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0780200-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0143100-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0242900-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0605300-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0761500-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0761500-02
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs04t0573300-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs08t0326700-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs08t0452100-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs09t0441000-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs09t0479900-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs10t0394200-01
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s16390.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s16750.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s47280.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s47290.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s47300.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0002s12130.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0002s25800.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0003s06530.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0003s06940.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0004s17960.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0005s06820.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0005s18880.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0006s00370.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0006s14340.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04500.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04510.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04510.2
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04520.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0009s13590.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s03070.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s04970.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s04980.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s16870.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0012s14140.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0014s01910.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0014s07060.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0014s16970.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0015s14110.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g000350.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g007310.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g013970.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g023190.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g041350.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g047390.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb02g025810.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb02g027810.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb03g033440.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g006740.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g034940.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g034950.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g034980.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb06g025980.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb07g022170.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb10g023870.1
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_12.100
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_136.70
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_18.162
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_21.114
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_25.132
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_27.203
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_28.23
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_37.148
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_4.162
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_481.2
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_6.54
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_87.29
Tandem Duplication
ClusterGene Num.Gene List
Cluster_325Bol019218 Bol019219 Bol019220 Bol019221 Bol019222 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4799202..5450513 (-)A.thalianaChr5:26530235..26889238 (+)50
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4434047..5026702 (+)B.rapaA09:7722370..7951360 (+)35
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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