Basic Information
Gene Model:Bol019195
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:1768 bp
Transcript Length:1677 bp
Protein Length:558 aa
Strand:-
Location:Scaffold000133: 1178856 : 1180623
Gene CDSs(2): 1-1274 | 1366-1768 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00514Arm 346 387 8.6e-06IPR000225Armadillo
HMMPfamPF00514Arm 305 345 3.4e-05IPR000225Armadillo
HMMPfamPF04564U-box 30 58 8.5e-14IPR003613U box domain
superfamilySSF57850RING/U-box 27 104 9.8e-11Not foundNot found
superfamilySSF48371ARM repeat 251 513 2e-46IPR016024Armadillo-type fold
ProfileScanPS50176ARM_REPEAT 357 400 9.537IPR000225Armadillo
Segsegseg 219 237 NANot foundNot found
Segsegseg 513 527 NANot foundNot found
Segsegseg 196 206 NANot foundNot found
Segsegseg 167 184 NANot foundNot found
HMMPantherPTHR23315:SF7ANKYRIN-REPEAT-ARM D 277 431 1.6e-15Not foundNot found
HMMPantherPTHR23315BETA CATENIN-RELATED 277 431 1.6e-15Not foundNot found
HMMSmartSM00185no description 427 471 33IPR000225Armadillo
HMMSmartSM00185no description 305 345 3.7IPR000225Armadillo
HMMSmartSM00185no description 346 387 1.8IPR000225Armadillo
HMMSmartSM00185no description 388 426 80IPR000225Armadillo
HMMSmartSM00504no description 34 97 9.9e-14IPR003613U box domain
HMMSmartSM00185no description 264 304 3.9e+02IPR000225Armadillo
Gene3DG3DSA:1.25.10.10no description 236 512 7.3e-39IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 27 104 1.4e-18Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q0WUF60.0PUB41_ARATH U-box domain-containing protein 41 OS=Arabidopsis thaliana GN=PUB41 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IEL81e-144B9IEL8_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_902475 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ago:AGOS_AEL048W2e-11K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11679(7 genes,3 taxa):Arabidopsis thalianaAT3G47820.1
ORTHOMCL11679(7 genes,3 taxa):Arabidopsis thalianaAT5G62560.1
ORTHOMCL11679(7 genes,3 taxa):Brassica oleraceaBol019195
ORTHOMCL11679(7 genes,3 taxa):Brassica oleraceaBol020697
ORTHOMCL11679(7 genes,3 taxa):Brassica oleraceaBol024918
ORTHOMCL11679(7 genes,3 taxa):Brassica rapaBra029250
ORTHOMCL11679(7 genes,3 taxa):Brassica rapaBra035890
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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