Basic Information
Gene Model:Bol019113
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:1773 bp
Transcript Length:1773 bp
Protein Length:590 aa
Strand:-
Location:Scaffold000133: 567950 : 569722
Gene CDSs(1): 1-1773 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01359ZF_PHD_1 294 337 NAIPR019786Zinc finger, PHD-type, conserved site
HMMSmartSM00249no description 296 338 3.8e-05IPR001965Zinc finger, PHD-type
HMMSmartSM00249no description 339 386 1.4IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.40.630.30no description 471 565 0.00063IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.30.40.10no description 270 338 3.4e-06Not foundNot found
superfamilySSF57903FYVE/PHD zinc finger 339 404 3.1e-05IPR011011Zinc finger, FYVE/PHD-type
superfamilySSF57903FYVE/PHD zinc finger 286 337 3.1e-08IPR011011Zinc finger, FYVE/PHD-type
superfamilySSF55729Acyl-CoA N-acyltrans 416 580 8.3e-12IPR016181Acyl-CoA N-acyltransferase
Coilcoilcoiled-coil 259 280 NANot foundNot found
HMMPfamPF00583Acetyltransf_1 475 549 0.013IPR000182GCN5-related N-acetyltransferase
HMMPfamPF00628PHD 296 337 8.6e-11IPR019787Zinc finger, PHD-finger
ProfileScanPS50016ZF_PHD_2 294 340 9.499IPR019787Zinc finger, PHD-finger
ProfileScanPS51186GNAT 420 566 12.992IPR000182GCN5-related N-acetyltransferase
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008080 Molecular Function N-acetyltransferase activity
GO:0008152 Biological Process metabolic process
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9Z0E33e-07AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FMZ91e-178Q9FMZ9_ARATH Putative uncharacterized protein At5g63900 OS=Arabidopsis thaliana GN=At5g63900 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_009824e-14K11655BAZ1A, ACF1bromodomain adjacent to zinc finger domain protein 1A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15992(4 genes,4 taxa):Arabidopsis thalianaAT5G63900.1
ORTHOMCL15992(4 genes,4 taxa):Brassica oleraceaBol019113
ORTHOMCL15992(4 genes,4 taxa):Brassica rapaBra037758
ORTHOMCL15992(4 genes,4 taxa):Carica papayaevm.TU.supercontig_142.23
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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