Basic Information
Gene Model:Bol019109
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:687 bp
Transcript Length:507 bp
Protein Length:168 aa
Strand:+
Location:Scaffold000133: 534058 : 534744
Gene CDSs(3): 1-291 | 377-502 | 598-687 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05479PsaN 34 168 2.2e-92IPR008796Photosystem I reaction centre subunit N
Segsegseg 65 85 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0009522 Cellular Component photosystem I
GO:0015979 Biological Process photosynthesis
GO:0042651 Cellular Component thylakoid membrane
Swiss-Prot
Best HitE_value Description
P491076e-82PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
TrEMBL
Best HitE_value Description
B9HES14e-61B9HES1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832238 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G640405e-63K02701psaNphotosystem I subunit PsaN
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6921(10 genes,8 taxa):Arabidopsis thalianaAT5G64040.2
ORTHOMCL6921(10 genes,8 taxa):Brassica oleraceaBol019109
ORTHOMCL6921(10 genes,8 taxa):Brassica rapaBra024261
ORTHOMCL6921(10 genes,8 taxa):Brassica rapaBra037761
ORTHOMCL6921(10 genes,8 taxa):Vitis viniferaGSVIVT01026478001
ORTHOMCL6921(10 genes,8 taxa):Oryza sativaOs12t0189400-01
ORTHOMCL6921(10 genes,8 taxa):Populus trichocarpaPOPTR_0005s06420.1
ORTHOMCL6921(10 genes,8 taxa):Populus trichocarpaPOPTR_0007s04160.1
ORTHOMCL6921(10 genes,8 taxa):Sorghum bicolorSb08g005300.1
ORTHOMCL6921(10 genes,8 taxa):Carica papayaevm.TU.supercontig_3.345
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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