Basic Information
Gene Model:Bol019101
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:2556 bp
Transcript Length:1671 bp
Protein Length:556 aa
Strand:+
Location:Scaffold000133: 504762 : 507317
Gene CDSs(4): 1-792 | 1496-1809 | 1891-2339 | 2441-2556 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR00785dass: transporter, d 107 550 2.1e-134IPR001898Sodium/sulphate symporter
HMMPantherPTHR10283CATION TRANSPORTER R 108 555 4.1e-236Not foundNot found
HMMPantherPTHR10283:SF13SODIUM/CARBOXYLATE C 108 555 4.1e-236Not foundNot found
Segsegseg 382 393 NANot foundNot found
Segsegseg 483 496 NANot foundNot found
Segsegseg 155 163 NANot foundNot found
Segsegseg 62 84 NANot foundNot found
Segsegseg 89 102 NANot foundNot found
Segsegseg 16 44 NANot foundNot found
HMMPfamPF00939Na_sulph_symp 86 556 1e-180IPR001898Sodium/sulphate symporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006814 Biological Process sodium ion transport
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q413641e-138SOT1_SPIOL 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FMF70.0Q9FMF7_ARATH 2-oxoglutarate/malate translocator OS=Arabidopsis thaliana GN=At5g64290 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5773710.0K03319TC.DASSdivalent anion:Na+ symporter, DASS family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2224(15 genes,8 taxa):Arabidopsis thalianaAT5G64280.1
ORTHOMCL2224(15 genes,8 taxa):Arabidopsis thalianaAT5G64290.1
ORTHOMCL2224(15 genes,8 taxa):Brassica oleraceaBol015851
ORTHOMCL2224(15 genes,8 taxa):Brassica oleraceaBol019101
ORTHOMCL2224(15 genes,8 taxa):Brassica rapaBra024282
ORTHOMCL2224(15 genes,8 taxa):Brassica rapaBra031926
ORTHOMCL2224(15 genes,8 taxa):Brassica rapaBra037771
ORTHOMCL2224(15 genes,8 taxa):Vitis viniferaGSVIVT01015673001
ORTHOMCL2224(15 genes,8 taxa):Oryza sativaOs08t0481800-01
ORTHOMCL2224(15 genes,8 taxa):Populus trichocarpaPOPTR_0001s31810.1
ORTHOMCL2224(15 genes,8 taxa):Sorghum bicolorSb02g027290.1
ORTHOMCL2224(15 genes,8 taxa):Sorghum bicolorSb04g003080.1
ORTHOMCL2224(15 genes,8 taxa):Sorghum bicolorSb07g029165.1
ORTHOMCL2224(15 genes,8 taxa):Sorghum bicolorSb07g029170.1
ORTHOMCL2224(15 genes,8 taxa):Carica papayaevm.TU.contig_31478.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo