Basic Information
Gene Model:Bol019075
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:2001 bp
Transcript Length:1065 bp
Protein Length:354 aa
Strand:+
Location:Scaffold000133: 348040 : 350040
Gene CDSs(7): 1-179 | 283-345 | 697-813 | 909-1155 | 1370-1528 | 1617-1768 | 1854-2001 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 193 322 9.6e-12IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 17 144 4e-08IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 42 157 3.4e-07Not foundNot found
superfamilySSF103481Multidrug resistance 218 329 2e-08Not foundNot found
Segsegseg 301 317 NANot foundNot found
Segsegseg 278 298 NANot foundNot found
Segsegseg 92 108 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-535NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FGG31e-170Q9FGG3_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At5g64700 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10840(8 genes,7 taxa):Arabidopsis thalianaAT5G64700.1
ORTHOMCL10840(8 genes,7 taxa):Brassica oleraceaBol019075
ORTHOMCL10840(8 genes,7 taxa):Brassica rapaBra037791
ORTHOMCL10840(8 genes,7 taxa):Vitis viniferaGSVIVT01026614001
ORTHOMCL10840(8 genes,7 taxa):Oryza sativaOs05t0106200-01
ORTHOMCL10840(8 genes,7 taxa):Populus trichocarpaPOPTR_0001s31520.1
ORTHOMCL10840(8 genes,7 taxa):Populus trichocarpaPOPTR_0019s01810.1
ORTHOMCL10840(8 genes,7 taxa):Sorghum bicolorSb09g000780.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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