Basic Information
Gene Model:Bol019072
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:5433 bp
Transcript Length:3252 bp
Protein Length:1083 aa
Strand:-
Location:Scaffold000133: 313203 : 318635
Gene CDSs(14): 1-582 | 862-1212 | 1531-1727 | 1799-2075 | 2149-2361 | 2428-2553 | 2632-2769 | 3283-3628 | 3795-4061 | 4160-4325 | 4428-4533 | 4611-4816 | 4901-5096 | 5353-5433 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF57850RING/U-box 26 106 6.8e-14Not foundNot found
ProfileScanPS50089ZF_RING_2 39 85 9.008IPR001841Zinc finger, RING-type
Coilcoilcoiled-coil 679 700 NANot foundNot found
HMMPfamPF03552Cellulose_synt 259 1078 0IPR005150Cellulose synthase
HMMPantherPTHR13301X-BOX TRANSCRIPTION 1 115 6.7e-31Not foundNot found
HMMPantherPTHR13301:SF1TGACG-MOTIF-BINDING 1 115 6.7e-31Not foundNot found
Gene3DG3DSA:3.30.40.10no description 21 113 1.6e-33Not foundNot found
Segsegseg 670 691 NANot foundNot found
Segsegseg 981 1000 NANot foundNot found
Segsegseg 98 112 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
GO:0016020 Cellular Component membrane
GO:0016760 Molecular Function cellulose synthase (UDP-forming) activity
GO:0030244 Biological Process cellulose biosynthetic process
Swiss-Prot
Best HitE_value Description
Q94JQ60.0CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9HGD00.0B9HGD0_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_819877 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G647400.0K10999CESAcellulose synthase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT1G02730.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT1G32180.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT2G21770.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT2G25540.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT2G33100.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT3G03050.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G18780.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G32410.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G38190.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT4G39350.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G05170.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G09870.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G16910.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G17420.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G44030.1
ORTHOMCL7(190 genes,8 taxa):Arabidopsis thalianaAT5G64740.1
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol000794
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol000831
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol000897
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol001786
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol003795
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol005866
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol008772
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol012859
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol013511
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol015406
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol015407
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol015898
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol017911
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol019072
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol019836
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol020799
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol021311
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol021340
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol024411
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol024469
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol028813
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol033774
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol034448
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol037956
ORTHOMCL7(190 genes,8 taxa):Brassica oleraceaBol040770
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra005524
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra005845
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra006036
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra006407
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra008583
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra011345
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra011865
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra011900
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra012578
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra021377
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra021827
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra023588
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra023952
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra024324
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra028768
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra029874
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra031904
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra032022
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033344
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033554
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033714
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra033849
ORTHOMCL7(190 genes,8 taxa):Brassica rapaBra037793
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01013057001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01013471001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01021248001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01021798001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01022285001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01023643001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01023837001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01023850001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01024398001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01028071001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01028234001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01028402001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01032096001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01033297001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01034552001
ORTHOMCL7(190 genes,8 taxa):Vitis viniferaGSVIVT01035830001
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs01t0750300-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs01t0750300-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs01t0750300-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0808100-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0808100-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0837100-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs03t0837100-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-04
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-05
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs05t0176100-06
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0111800-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0111800-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0111800-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0336500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs06t0601600-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0208500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0208500-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0252400-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-03
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-04
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0424400-05
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0551600-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0551700-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0552800-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0552800-02
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0553000-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0553300-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs07t0553400-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs08t0160500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs08t0345500-00
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs09t0422500-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs10t0343400-01
ORTHOMCL7(190 genes,8 taxa):Oryza sativaOs10t0467800-01
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s01880.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s14460.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.3
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s27320.4
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0001s45340.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0002s06710.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0002s20130.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0002s25970.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0003s09580.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0003s17630.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0004s05830.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0004s21860.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0005s02770.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0005s08970.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0005s21620.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s05110.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s19580.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s19580.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0006s26810.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0007s07120.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0007s07120.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0009s06560.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0009s17100.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0011s07040.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0013s02050.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0013s07900.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0014s12000.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0016s05520.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0016s05520.2
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0018s01540.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0018s11290.1
ORTHOMCL7(190 genes,8 taxa):Populus trichocarpaPOPTR_0019s07620.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g002050.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g004210.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g019720.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb01g027880.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g006290.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g007810.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g010110.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g022011.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g025020.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g035980.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g035990.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036000.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036010.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036020.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036023.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb02g036030.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb03g004320.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb03g034680.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb07g004110.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb07g011890.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb08g017750.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb09g005280.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb10g000980.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb10g019350.1
ORTHOMCL7(190 genes,8 taxa):Sorghum bicolorSb10g023430.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.contig_29394.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.contig_43728.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_1145.1
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_115.9
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_151.48
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_165.51
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_3.300
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_36.80
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_426.3
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_46.185
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_49.100
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_7.98
ORTHOMCL7(190 genes,8 taxa):Carica papayaevm.TU.supercontig_72.34
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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