Basic Information
Gene Model:Bol019043
Gene Family:14-3-3 Gene Family
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:1959 bp
Transcript Length:750 bp
Protein Length:249 aa
Strand:+
Location:Scaffold000133: 95995 : 97953
Gene CDSs(4): 1-489 | 1162-1284 | 1723-1839 | 1939-1959 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00101no description 8 248 1.1e-181IPR00030814-3-3 protein
superfamilySSF4844514-3-3 protein 5 241 2.4e-102IPR00030814-3-3 protein
HMMPfamPF0024414-3-3 8 246 1.6e-141IPR00030814-3-3 protein
HMMPantherPTHR1886014-3-3 3 249 4.4e-186IPR00030814-3-3 protein
HMMPIRPIRSF00086814-3-3 protein 6 249 1.3e-165IPR00030814-3-3 protein
Gene3DG3DSA:1.20.190.20no description 6 249 1.3e-103IPR00030814-3-3 protein
Coilcoilcoiled-coil 14 35 NANot foundNot found
PatternScanPS007971433_2 221 240 NAIPR00030814-3-3 protein
PatternScanPS007961433_1 49 59 NAIPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
P483481e-13814338_ARATH 14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=2
TrEMBL
Best HitE_value Description
C0KJL11e-128C0KJL1_BRANA 1433-4 OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002678291e-112K06630YWHAtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8728(9 genes,5 taxa):Arabidopsis thalianaAT5G65430.1
ORTHOMCL8728(9 genes,5 taxa):Brassica oleraceaBol009232
ORTHOMCL8728(9 genes,5 taxa):Brassica oleraceaBol019043
ORTHOMCL8728(9 genes,5 taxa):Brassica rapaBra024384
ORTHOMCL8728(9 genes,5 taxa):Brassica rapaBra037818
ORTHOMCL8728(9 genes,5 taxa):Populus trichocarpaPOPTR_0002s10400.1
ORTHOMCL8728(9 genes,5 taxa):Populus trichocarpaPOPTR_0005s17740.1
ORTHOMCL8728(9 genes,5 taxa):Carica papayaevm.TU.supercontig_309.6
ORTHOMCL8728(9 genes,5 taxa):Carica papayaevm.TU.supercontig_55.37
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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