Basic Information
Gene Model:Bol019041
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000133
Sequence:
 | 
Gene Structure
Nucleotide Length:2933 bp
Transcript Length:2262 bp
Protein Length:753 aa
Strand:+
Location:Scaffold000133: 89160 : 92092
Gene CDSs(6): 1-199 | 278-390 | 491-1003 | 1210-1350 | 1424-2656 | 2871-2933 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258:SF148gb def: Similarity t 411 733 6.1e-200Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 411 733 6.1e-200Not foundNot found
superfamilySSF56112Protein kinase-like 448 700 3.8e-35IPR011009Protein kinase-like domain
Segsegseg 621 626 NANot foundNot found
Segsegseg 378 399 NANot foundNot found
Segsegseg 214 227 NANot foundNot found
Segsegseg 246 272 NANot foundNot found
Segsegseg 146 162 NANot foundNot found
Coilcoilcoiled-coil 372 393 NANot foundNot found
Coilcoilcoiled-coil 323 344 NANot foundNot found
Coilcoilcoiled-coil 246 267 NANot foundNot found
HMMSmartSM00219no description 461 688 9.7e-08IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 458 688 2.3e-06IPR002290Serine/threonine-protein kinase domain
ProfileScanPS50011PROTEIN_KINASE_DOM 458 753 16.980IPR000719Protein kinase, catalytic domain
HMMPfamPF07714Pkinase_Tyr 467 581 1.4e-15IPR001245Tyrosine-protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 529 719 7.4e-19Not foundNot found
Gene3DG3DSA:3.30.200.20no description 438 529 1e-06Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9FGD70.0PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1
TrEMBL
Best HitE_value Description
A7R1780.0A7R178_VITVI Chromosome undetermined scaffold_340, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00011816001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
oaa:1000776831e-20K04730IRAK1interleukin-1 receptor-associated kinase 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10847(8 genes,6 taxa):Arabidopsis thalianaAT5G65500.1
ORTHOMCL10847(8 genes,6 taxa):Brassica oleraceaBol009241
ORTHOMCL10847(8 genes,6 taxa):Brassica oleraceaBol019041
ORTHOMCL10847(8 genes,6 taxa):Brassica rapaBra024393
ORTHOMCL10847(8 genes,6 taxa):Brassica rapaBra037819
ORTHOMCL10847(8 genes,6 taxa):Vitis viniferaGSVIVT01002533001
ORTHOMCL10847(8 genes,6 taxa):Populus trichocarpaPOPTR_0007s14220.1
ORTHOMCL10847(8 genes,6 taxa):Carica papayaevm.TU.supercontig_55.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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