Basic Information
Gene Model:Bol018722
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000137
Sequence:
 | 
Gene Structure
Nucleotide Length:2365 bp
Transcript Length:1848 bp
Protein Length:615 aa
Strand:-
Location:C01: 16211017 : 16213381
Gene CDSs(4): 1-154 | 516-733 | 812-1365 | 1444-2365 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 590 611 NANot foundNot found
Segsegseg 154 173 NANot foundNot found
Segsegseg 200 210 NANot foundNot found
Segsegseg 264 278 NANot foundNot found
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 12 613 0Not foundNot found
HMMPantherPTHR11654:SF20NITRATE TRANSPORTER 12 613 0Not foundNot found
HMMPfamPF00854PTR2 112 523 1.5e-58IPR000109Oligopeptide transporter
superfamilySSF103473MFS general substrat 22 604 9.7e-20IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9M8171e-105PTR2X_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9SU590.0Q9SU59_ARATH Putative peptide transporter OS=Arabidopsis thaliana GN=T17F15.170 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_07304102e-97K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL243(38 genes,8 taxa):Arabidopsis thalianaAT1G18880.1
ORTHOMCL243(38 genes,8 taxa):Arabidopsis thalianaAT3G47960.1
ORTHOMCL243(38 genes,8 taxa):Arabidopsis thalianaAT5G62680.1
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol013180
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol018722
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol019185
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol019440
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol020699
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol024088
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol024931
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol030729
ORTHOMCL243(38 genes,8 taxa):Brassica oleraceaBol044846
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra010111
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra016534
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra018096
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra019521
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra025695
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra029248
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra031054
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra033782
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra035885
ORTHOMCL243(38 genes,8 taxa):Brassica rapaBra035886
ORTHOMCL243(38 genes,8 taxa):Vitis viniferaGSVIVT01008073001
ORTHOMCL243(38 genes,8 taxa):Vitis viniferaGSVIVT01032603001
ORTHOMCL243(38 genes,8 taxa):Oryza sativaOs03t0687000-01
ORTHOMCL243(38 genes,8 taxa):Oryza sativaOs07t0190650-00
ORTHOMCL243(38 genes,8 taxa):Oryza sativaOs12t0638200-01
ORTHOMCL243(38 genes,8 taxa):Oryza sativaOs12t0638300-01
ORTHOMCL243(38 genes,8 taxa):Populus trichocarpaPOPTR_0001s34640.1
ORTHOMCL243(38 genes,8 taxa):Populus trichocarpaPOPTR_0012s07320.1
ORTHOMCL243(38 genes,8 taxa):Populus trichocarpaPOPTR_0012s07340.1
ORTHOMCL243(38 genes,8 taxa):Populus trichocarpaPOPTR_0017s11320.1
ORTHOMCL243(38 genes,8 taxa):Sorghum bicolorSb01g011700.1
ORTHOMCL243(38 genes,8 taxa):Sorghum bicolorSb02g005420.1
ORTHOMCL243(38 genes,8 taxa):Sorghum bicolorSb08g023060.1
ORTHOMCL243(38 genes,8 taxa):Carica papayaevm.TU.supercontig_17.169
ORTHOMCL243(38 genes,8 taxa):Carica papayaevm.TU.supercontig_17.170
ORTHOMCL243(38 genes,8 taxa):Carica papayaevm.TU.supercontig_17.171
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:15413989..16693039 (+)A.thalianaChr3:17517355..17878173 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:15913121..17003310 (+)B.rapaA06:23991088..24590658 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G479601769794217700769Chr3Subgenome_I82
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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