Basic Information
Gene Model:Bol018489
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000139
Sequence:
 | 
Gene Structure
Nucleotide Length:3984 bp
Transcript Length:1947 bp
Protein Length:648 aa
Strand:+
Location:C08: 41396403 : 41400386
Gene CDSs(20): 1-82 | 189-244 | 357-438 | 526-604 | 695-745 | 836-932 | 1021-1053 | 1198-1326 | 1467-1637 | 1725-1808 | 1911-2009 | 2086-2156 | 2258-2354 | 2459-2584 | 2653-2748 | 2851-2967 | 3226-3449 | 3560-3650 | 3755-3844 | 3913-3984 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00995Sec1 580 627 2.3e-06IPR001619Sec1-like protein
HMMPfamPF00995Sec1 45 434 1.2e-70IPR001619Sec1-like protein
HMMPantherPTHR11679:SF5PLANT SEC1 36 633 0Not foundNot found
HMMPantherPTHR11679VESICLE PROTEIN SORT 36 633 0IPR001619Sec1-like protein
superfamilySSF56815Sec1/munc18-like (SM 17 633 2.4e-140IPR001619Sec1-like protein
Gene3DG3DSA:3.90.830.10no description 267 387 1.5e-33Not foundNot found
Gene3DG3DSA:3.40.50.2060no description 22 152 9.1e-33Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006904 Biological Process vesicle docking during exocytosis
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9C5P70.0SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3
TrEMBL
Best HitE_value Description
B9RDD00.0B9RDD0_RICCO Plant sec1, putative OS=Ricinus communis GN=RCOM_1612150 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7986434e-30K12479VPS45vacuolar protein sorting-associated protein 45
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT1G02010.1
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT1G12360.1
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT4G12120.1
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol010435
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol018489
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol020079
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol030527
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol031363
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra000761
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra019760
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra026974
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra029438
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra032660
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01016199001
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01026673001
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01027604001
ORTHOMCL573(25 genes,8 taxa):Oryza sativaOs04t0252400-01
ORTHOMCL573(25 genes,8 taxa):Oryza sativaOs06t0135900-01
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0001s08020.1
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0003s11540.1
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0014s06490.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb04g015010.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb06g003780.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb10g002411.1
ORTHOMCL573(25 genes,8 taxa):Carica papayaevm.TU.supercontig_29.81
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:41132226..41485735 (+)A.thalianaChr1:3631..422437 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:40813352..41476458 (+)B.rapaA10:12795068..13789600 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G02010347891352480Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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