Basic Information
Gene Model:Bol018444
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000139
Sequence:
 | 
Gene Structure
Nucleotide Length:3771 bp
Transcript Length:1107 bp
Protein Length:368 aa
Strand:-
Location:C08: 41157583 : 41161353
Gene CDSs(6): 1-166 | 270-421 | 1278-1680 | 2923-3039 | 3416-3478 | 3566-3771 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 353 362 NANot foundNot found
Segsegseg 313 322 NANot foundNot found
superfamilySSF103481Multidrug resistance 51 167 2.4e-08Not foundNot found
superfamilySSF103481Multidrug resistance 226 337 1.5e-10Not foundNot found
HMMPfamPF00892DUF6 221 330 1e-06IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 26 160 7.7e-12IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-445NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5XEZ01e-143Q5XEZ0_ARATH At1g01070 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25062(2 genes,2 taxa):Brassica oleraceaBol018444
ORTHOMCL25062(2 genes,2 taxa):Brassica rapaBra032618
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10702Bol018443 Bol018444 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:41132226..41485735 (+)A.thalianaChr1:3631..422437 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:40813352..41476458 (+)B.rapaA10:12795068..13789600 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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