Basic Information
Gene Model:Bol018443
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000139
Sequence:
 | 
Gene Structure
Nucleotide Length:2608 bp
Transcript Length:1029 bp
Protein Length:342 aa
Strand:-
Location:C08: 41149544 : 41152151
Gene CDSs(6): 1-148 | 238-389 | 814-1216 | 1758-1874 | 2068-2130 | 2463-2608 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 228 247 NANot foundNot found
Segsegseg 116 129 NANot foundNot found
superfamilySSF103481Multidrug resistance 31 147 1.9e-07Not foundNot found
superfamilySSF103481Multidrug resistance 206 317 3.3e-10Not foundNot found
HMMPfamPF00892DUF6 201 310 2.6e-07IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 6 140 1.1e-12IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1637e-455NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5XEZ01e-163Q5XEZ0_ARATH At1g01070 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13696(5 genes,3 taxa):Arabidopsis thalianaAT1G01070.1
ORTHOMCL13696(5 genes,3 taxa):Brassica oleraceaBol018443
ORTHOMCL13696(5 genes,3 taxa):Brassica oleraceaBol040721
ORTHOMCL13696(5 genes,3 taxa):Brassica rapaBra032617
ORTHOMCL13696(5 genes,3 taxa):Brassica rapaBra033290
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10702Bol018443 Bol018444 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:41132226..41485735 (+)A.thalianaChr1:3631..422437 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:40813352..41476458 (+)B.rapaA10:12795068..13789600 (-)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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