Basic Information
Gene Model:Bol018220
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C02
Scaffold:Scaffold000140
Sequence:
 | 
Gene Structure
Nucleotide Length:2851 bp
Transcript Length:1389 bp
Protein Length:462 aa
Strand:+
Location:C02: 10548104 : 10550954
Gene CDSs(11): 1-247 | 846-938 | 1096-1151 | 1256-1320 | 1412-1486 | 1611-1689 | 1770-1808 | 1885-1993 | 2079-2197 | 2275-2391 | 2462-2851 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10953UBIQUITIN-ACTIVATING 62 337 1.1e-80Not foundNot found
Coilcoilcoiled-coil 384 405 NANot foundNot found
Coilcoilcoiled-coil 8 43 NANot foundNot found
ProfileScanPS50206RHODANESE_3 356 460 15.682IPR001763Rhodanese-like
HMMSmartSM00450no description 346 457 9.7e-18IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 346 454 6.6e-09IPR001763Rhodanese-like
HMMPfamPF05237MoeZ_MoeB 225 311 5.3e-43IPR007901MoeZ/MoeB
HMMPfamPF00899ThiF 88 222 2.7e-67IPR000594UBA/THIF-type NAD/FAD binding fold
superfamilySSF52821Rhodanese/Cell cycle 336 460 6.7e-22IPR001763Rhodanese-like
superfamilySSF69572Activating enzymes o 60 308 3.6e-102IPR009036Molybdenum cofactor biosynthesis, MoeB
Gene3DG3DSA:3.40.250.10no description 344 457 6.8e-19IPR001763Rhodanese-like
Gene3DG3DSA:3.40.50.720no description 59 309 5.9e-79IPR016040NAD(P)-binding domain
Segsegseg 14 26 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005488 Molecular Function binding
GO:0008152 Biological Process metabolic process
Swiss-Prot
Best HitE_value Description
Q9ZNW00.0MOCS3_ARATH Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana GN=MOCS3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q2V2Y40.0Q2V2Y4_ARATH AT5G55130 protein OS=Arabidopsis thaliana GN=AT5G55130 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G551300.0K11996MOCS3, UBA4, moeBadenylyltransferase and sulfurtransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4209(12 genes,8 taxa):Arabidopsis thalianaAT5G55130.1
ORTHOMCL4209(12 genes,8 taxa):Brassica oleraceaBol018220
ORTHOMCL4209(12 genes,8 taxa):Brassica oleraceaBol038934
ORTHOMCL4209(12 genes,8 taxa):Brassica rapaBra002930
ORTHOMCL4209(12 genes,8 taxa):Brassica rapaBra035556
ORTHOMCL4209(12 genes,8 taxa):Vitis viniferaGSVIVT01037705001
ORTHOMCL4209(12 genes,8 taxa):Oryza sativaOs02t0525400-01
ORTHOMCL4209(12 genes,8 taxa):Oryza sativaOs02t0804600-00
ORTHOMCL4209(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s36580.1
ORTHOMCL4209(12 genes,8 taxa):Sorghum bicolorSb04g030190.1
ORTHOMCL4209(12 genes,8 taxa):Sorghum bicolorSb10g004850.1
ORTHOMCL4209(12 genes,8 taxa):Carica papayaevm.TU.supercontig_12.259
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:10094646..11309924 (-)A.thalianaChr5:22075283..22673855 (+)61
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:10097686..11309924 (+)B.rapaA10:10530277..11395766 (+)44
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G551302237318022376086Chr5Subgenome_I221
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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