Basic Information
Gene Model:Bol018110
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000141
Sequence:
 | 
Gene Structure
Nucleotide Length:6913 bp
Transcript Length:1443 bp
Protein Length:480 aa
Strand:+
Location:C05: 23330248 : 23337160
Gene CDSs(2): 1-462 | 5933-6913 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11785AMINO ACID TRANSPORT 13 478 3.3e-187IPR002293Amino acid/polyamine transporter I
HMMPantherPTHR11785:SF78GLUTAMATE/GAMMA-AMIN 13 478 3.3e-187Not foundNot found
HMMPIRPIRSF006060Amino acid transport 14 472 5.2e-59IPR002293Amino acid/polyamine transporter I
Segsegseg 398 410 NANot foundNot found
Segsegseg 48 64 NANot foundNot found
Segsegseg 14 26 NANot foundNot found
HMMPfamPF00324AA_permease 36 451 0.0048IPR004841Amino acid permease-associated region
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0006865 Biological Process amino acid transport
GO:0015171 Molecular Function amino acid transmembrane transporter activity
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
P370347e-18Y1691_LEGPH Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2
TrEMBL
Best HitE_value Description
Q9LH390.0Q9LH39_ARATH Genomic DNA, chromosome 3, BAC clone: T31J18 OS=Arabidopsis thaliana GN=At3g19553 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
lma:LmjF35.44104e-48K01552E3.6.3.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6210(10 genes,7 taxa):Arabidopsis thalianaAT3G19553.1
ORTHOMCL6210(10 genes,7 taxa):Brassica oleraceaBol018110
ORTHOMCL6210(10 genes,7 taxa):Brassica oleraceaBol031021
ORTHOMCL6210(10 genes,7 taxa):Brassica rapaBra022433
ORTHOMCL6210(10 genes,7 taxa):Brassica rapaBra038217
ORTHOMCL6210(10 genes,7 taxa):Vitis viniferaGSVIVT01037860001
ORTHOMCL6210(10 genes,7 taxa):Populus trichocarpaPOPTR_0001s30330.1
ORTHOMCL6210(10 genes,7 taxa):Populus trichocarpaPOPTR_0009s09350.1
ORTHOMCL6210(10 genes,7 taxa):Sorghum bicolorSb08g019330.1
ORTHOMCL6210(10 genes,7 taxa):Carica papayaevm.TU.supercontig_106.70
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:19036067..23690127 (-)A.thalianaChr3:6669146..7716343 (+)157
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:22715658..23715064 (+)B.rapaA05:5924029..6376503 (-)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1955367907426792919Chr3Subgenome_III(LF)217
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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