Basic Information
Gene Model:Bol018098
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C05
Scaffold:Scaffold000141
Sequence:
 | 
Gene Structure
Nucleotide Length:3145 bp
Transcript Length:1815 bp
Protein Length:604 aa
Strand:-
Location:C05: 23479770 : 23482914
Gene CDSs(12): 1-417 | 499-600 | 722-778 | 908-973 | 1347-1523 | 1602-1688 | 1788-1852 | 1926-2002 | 2074-2120 | 2221-2351 | 2441-2510 | 2627-3145 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51182C2_TENSIN 322 449 16.780IPR014020Tensin phosphatase, C2 domain
ProfileScanPS51181PPASE_TENSIN 136 315 31.758IPR014019Phosphatase tensin type
HMMPfamPF10409PTEN_C2 320 448 1.9e-29IPR014020Tensin phosphatase, C2 domain
Gene3DG3DSA:3.90.190.10no description 129 312 2.8e-65Not foundNot found
superfamilySSF49562C2 domain (Calcium/l 392 450 1.1e-06IPR008973C2 calcium/lipid-binding region, CaLB
superfamilySSF52799(Phosphotyrosine pro 150 316 4.9e-38Not foundNot found
HMMPantherPTHR12305:SF8PTEN-RELATED, ARATH 139 602 0Not foundNot found
HMMPantherPTHR12305PHOSPHATASE WITH HOM 139 602 0Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 252 262 NAIPR016130Protein-tyrosine phosphatase, active site
Segsegseg 570 582 NANot foundNot found
Segsegseg 540 560 NANot foundNot found
Segsegseg 454 472 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q8T9S76e-55PTEN_DICDI Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LT750.0Q9LT75_ARATH Tyrosine phosphatase-like protein OS=Arabidopsis thaliana GN=At3g19420 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G194200.0K01110E3.1.3.67, PTENphosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1550(17 genes,8 taxa):Arabidopsis thalianaAT3G19420.1
ORTHOMCL1550(17 genes,8 taxa):Arabidopsis thalianaAT3G50110.1
ORTHOMCL1550(17 genes,8 taxa):Brassica oleraceaBol016970
ORTHOMCL1550(17 genes,8 taxa):Brassica oleraceaBol018098
ORTHOMCL1550(17 genes,8 taxa):Brassica oleraceaBol031011
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra012908
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra022420
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra022421
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra038209
ORTHOMCL1550(17 genes,8 taxa):Vitis viniferaGSVIVT01003178001
ORTHOMCL1550(17 genes,8 taxa):Vitis viniferaGSVIVT01022060001
ORTHOMCL1550(17 genes,8 taxa):Oryza sativaOs12t0407500-01
ORTHOMCL1550(17 genes,8 taxa):Oryza sativaOs12t0407500-02
ORTHOMCL1550(17 genes,8 taxa):Populus trichocarpaPOPTR_0001s30940.1
ORTHOMCL1550(17 genes,8 taxa):Populus trichocarpaPOPTR_0009s10080.1
ORTHOMCL1550(17 genes,8 taxa):Sorghum bicolorSb02g000980.1
ORTHOMCL1550(17 genes,8 taxa):Carica papayaevm.TU.supercontig_200.15
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:19036067..23690127 (-)A.thalianaChr3:6669146..7716343 (+)157
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:22715658..23715064 (+)B.rapaA05:5924029..6376503 (-)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1942067313766735623Chr3Subgenome_III(LF)217
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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