Basic Information
Gene Model:Bol018091
Gene Family:U-box Gene Family
Chromosome:C05
Scaffold:Scaffold000141
Sequence:
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Gene Structure
Nucleotide Length:1266 bp
Transcript Length:1266 bp
Protein Length:421 aa
Strand:+
Location:C05: 23579947 : 23581212
Gene CDSs(1): 1-1266 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.25.10.10no description 124 398 1.7e-12IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 10 88 1.2e-24Not foundNot found
Segsegseg 386 399 NANot foundNot found
Segsegseg 366 379 NANot foundNot found
Segsegseg 125 137 NANot foundNot found
HMMPfamPF04564U-box 13 88 3e-31IPR003613U box domain
HMMSmartSM00504no description 17 81 2.3e-31IPR003613U box domain
superfamilySSF57850RING/U-box 2 84 4.1e-13Not foundNot found
superfamilySSF48371ARM repeat 55 400 8.3e-36IPR016024Armadillo-type fold
HMMPantherPTHR23258SERINE-THREONINE PRO 15 81 4e-11Not foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 15 81 4e-11Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9LT790.0PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1
TrEMBL
Best HitE_value Description
A8IXJ00.0A8IXJ0_BRACM U-box domain-containing protein OS=Brassica campestris PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_678405e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1980(15 genes,8 taxa):Arabidopsis thalianaAT1G49780.1
ORTHOMCL1980(15 genes,8 taxa):Arabidopsis thalianaAT3G19380.1
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol018091
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol023451
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol031005
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra014206
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra022415
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra022417
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra038205
ORTHOMCL1980(15 genes,8 taxa):Vitis viniferaGSVIVT01031720001
ORTHOMCL1980(15 genes,8 taxa):Oryza sativaOs02t0548700-00
ORTHOMCL1980(15 genes,8 taxa):Populus trichocarpaPOPTR_0004s14720.1
ORTHOMCL1980(15 genes,8 taxa):Populus trichocarpaPOPTR_0009s10310.1
ORTHOMCL1980(15 genes,8 taxa):Sorghum bicolorSb04g022280.1
ORTHOMCL1980(15 genes,8 taxa):Carica papayaevm.TU.supercontig_1383.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:19036067..23690127 (-)A.thalianaChr3:6669146..7716343 (+)157
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:22715658..23715064 (+)B.rapaA05:5924029..6376503 (-)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1938067143926716099Chr3Subgenome_III(LF)217
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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