Basic Information
Gene Model:Bol018064
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:304 bp
Transcript Length:225 bp
Protein Length:74 aa
Strand:-
Location:C01: 4229490 : 4229793
Gene CDSs(2): 1-135 | 215-304 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 61 6.1e-23IPR000612Uncharacterised protein family UPF0057
PatternScanPS01309UPF0057 12 27 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 6 57 2.5e-19IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9M0951e-30RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q6GYJ63e-33Q6GYJ6_BRARP Salt and low temperature response protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3240(13 genes,7 taxa):Arabidopsis thalianaAT4G28088.1
ORTHOMCL3240(13 genes,7 taxa):Arabidopsis thalianaAT4G30650.1
ORTHOMCL3240(13 genes,7 taxa):Arabidopsis thalianaAT4G30660.1
ORTHOMCL3240(13 genes,7 taxa):Brassica oleraceaBol018063
ORTHOMCL3240(13 genes,7 taxa):Brassica oleraceaBol018064
ORTHOMCL3240(13 genes,7 taxa):Brassica rapaBra011208
ORTHOMCL3240(13 genes,7 taxa):Brassica rapaBra011209
ORTHOMCL3240(13 genes,7 taxa):Brassica rapaBra024053
ORTHOMCL3240(13 genes,7 taxa):Brassica rapaBra026283
ORTHOMCL3240(13 genes,7 taxa):Vitis viniferaGSVIVT01023629001
ORTHOMCL3240(13 genes,7 taxa):Oryza sativaOs09t0558100-01
ORTHOMCL3240(13 genes,7 taxa):Populus trichocarpaPOPTR_0006s19630.1
ORTHOMCL3240(13 genes,7 taxa):Sorghum bicolorSb02g032580.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_12942Bol018063 Bol018064 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3592651..5859156 (+)B.rapaA08:4009191..4992264 (+)87
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G306501495432014954968Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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