Basic Information
Gene Model:Bol018011
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:567 bp
Transcript Length:567 bp
Protein Length:188 aa
Strand:+
Location:C01: 3927822 : 3928388
Gene CDSs(1): 1-567 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02519Auxin_inducible 81 143 7.9e-32IPR003676Auxin responsive SAUR protein
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P330812e-10AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
O495811e-79O49581_ARATH Auxin induced like-protein OS=Arabidopsis thaliana GN=AT4g31320 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G313201e-80K14488SAURSAUR family protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8266(9 genes,7 taxa):Arabidopsis thalianaAT4G31320.1
ORTHOMCL8266(9 genes,7 taxa):Brassica oleraceaBol000450
ORTHOMCL8266(9 genes,7 taxa):Brassica oleraceaBol018011
ORTHOMCL8266(9 genes,7 taxa):Brassica rapaBra011258
ORTHOMCL8266(9 genes,7 taxa):Vitis viniferaGSVIVT01029558001
ORTHOMCL8266(9 genes,7 taxa):Vitis viniferaGSVIVT01029567001
ORTHOMCL8266(9 genes,7 taxa):Oryza sativaOs04t0608300-01
ORTHOMCL8266(9 genes,7 taxa):Populus trichocarpaPOPTR_0010s26030.1
ORTHOMCL8266(9 genes,7 taxa):Sorghum bicolorSb06g027920.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3269215..4168888 (+)B.rapaA09:14954195..15456043 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G313201519399315194562Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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