Basic Information
Gene Model:Bol017982
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:2649 bp
Transcript Length:2079 bp
Protein Length:692 aa
Strand:+
Location:C01: 3780698 : 3783346
Gene CDSs(5): 1-720 | 794-1102 | 1175-1465 | 1545-1658 | 2005-2649 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 614 635 NANot foundNot found
HMMPfamPF00535Glycos_transf_2 318 405 7.6e-05IPR001173Glycosyl transferase, family 2
superfamilySSF53448Nucleotide-diphospho 227 448 2.7e-23Not foundNot found
Segsegseg 647 657 NANot foundNot found
Segsegseg 617 638 NANot foundNot found
Segsegseg 487 499 NANot foundNot found
Segsegseg 109 123 NANot foundNot found
Gene3DG3DSA:3.90.550.10no description 227 448 4.3e-15Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9SB750.0CSLC5_ARATH Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RNP70.0B9RNP7_RICCO Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0919500 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_04g0062601e-125K13680CSLAbeta-mannan synthase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT2G24630.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT3G07330.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT3G28180.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT4G07960.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT4G31590.1
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol015100
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol017982
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol031211
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol032239
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol033739
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol033997
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol042957
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol045770
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra000635
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra001246
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra007838
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra011284
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra023993
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra025323
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra039061
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01002010001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01009290001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01016135001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01032523001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01033168001
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs03t0770800-01
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs07t0124750-00
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs08t0253800-01
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs09t0428000-00
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0002s11490.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0002s24980.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0005s19060.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0006s28560.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0014s18950.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0018s03370.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb01g006820.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb02g002090.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb03g035660.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb07g007890.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb09g025260.1
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_160.30
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_23.34
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_286.3
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_8.100
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3269215..4168888 (+)B.rapaA09:14954195..15456043 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G315901530950615312591Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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