Basic Information
Gene Model:Bol017981
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:1985 bp
Transcript Length:1458 bp
Protein Length:485 aa
Strand:-
Location:C01: 3774655 : 3776639
Gene CDSs(7): 1-309 | 403-657 | 761-1168 | 1269-1363 | 1435-1637 | 1714-1832 | 1917-1985 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 283 384 7e-23IPR003340Transcriptional factor B3
HMMPfamPF02362B3 147 245 1.1e-28IPR003340Transcriptional factor B3
HMMPfamPF02362B3 10 103 1.5e-10IPR003340Transcriptional factor B3
ProfileScanPS50863B3 283 383 10.574IPR003340Transcriptional factor B3
ProfileScanPS50863B3 147 244 16.257IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1 101 10.800IPR003340Transcriptional factor B3
Segsegseg 59 70 NANot foundNot found
Segsegseg 98 134 NANot foundNot found
Segsegseg 251 261 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 32 103 2.1e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O650980.0REM1_BRAOB B3 domain-containing protein REM1 OS=Brassica oleracea var. botrytis GN=REM1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S8E86e-17Q8S8E8_ARATH Putative uncharacterized protein At2g24690 OS=Arabidopsis thaliana GN=At2g24690 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_14882Bol017980 Bol017981 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3269215..4168888 (+)B.rapaA09:14954195..15456043 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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